Non-Coding RNA Search

Ss1.1-rtes31_j1.5

Sequence:


               
               CTGCACCGAAGCTTGACCCAGGCCCAAGACAGGAAACTTCAGTTGGAAGAAGAAATCGCT
GCTTACGAGGAGAGGATGAAAAAGCTTAACGTGGAATTAAAAAAACTCCAGTGCTTCCAG
CAGCAGAGTGAGATAGAGGTGCATGCCTTTGACAAGAAGCTGGAGGAGATGAGCAACCAG
GTGATGCAGTGGCAGAAGCAGCACCAGAGCGACCTCAAGATGCTGGCTGCTAAAGAGGAG
CAGCTCAGAGCGTTCCAGGAGGAAATGTCCGCCCTGAAGGAGAACCTCCTTGCGGACGAA
AAGGAGCCCTGTGCCTGCCCCAGCCGGTCTACACCCAAAGACACATGCAGGCTGCACCAG
GAGAATGATGAGAAGATGTGCAACATGGAGCAGTGGAACCTTTGATAATACCCACGTTCC
TCCTATCTCAGACGCATCCCTTCTCTTTGACCCAGACCCTTTGGGGAAGTGTGGAGATAA
GAGGGGAACAGGCAGAATAGGCAGCTTCCTCCCATAATGTGTTCTGGAAACCTCACAAGA
ATGCCCTAGTGCCCTGCACAGCCTGGGTCTGTGGCTACCTTTTCTGCCACTTCTAGACCC
CATGTTACCCCTGAGGGAAGAAGTCACCTGTAACAGAGCTGCCTGGCATGAAGCTAGTCC
TTGAGGAATCCCCTCATTCATTTCTCCTCAAATCAAGACTGTCATTTCCTCCCTGTTCCC
TCAGGTTCCTCATTTTGCTAGAATCAGCGCCTTGCCCTGAGCATCATTACCACGCACGTT
TTTCAGAGGACAGTGAGTTCCCATTCCTCTCTCTTGACTTGGATCAGCTCTTACGGGAAT
ATGTCAAGGTCCCAGCCTATTCTGCAAGATGCTAATGTTTTATTGAGTTTTGTCCACTTC
CTGCAGTGAAGTGAGCATACTACCATCTCCAGGCCCAAACTCTAAAATAAAGACATGAGC
ACAGCAGTCTCAGTGAGCTCTTGGCGTCTTGCAGACACTTTTGCCCCCTCAAGCCCCAGC
AGTGTATTCATCCCTATTTTCTCTGAATTCTAAAACATATAGGGTCCTCTTCAGGATATA
TAGGGTAGCTAAAATTCCCCAAGCAAGCTTCTGGATTATCTGAATTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCACCGAAGCTTGACCCAGGCCCAAGACAGGAAACTTCAGTTGGAAGAAGAAATCGCT
GCTTACGAGGAGAGGATGAAAAAGCTTAACGTGGAATTAAAAAAACTCCAGTGCTTCCAG
CAGCAGAGTGAGATAGAGGTGCATGCCTTTGACAAGAAGCTGGAGGAGATGAGCAACCAG
GTGATGCAGTGGCAGAAGCAGCACCAGAGCGACCTCAAGATGCTGGCTGCTAAAGAGGAG
CAGCTCAGAGCGTTCCAGGAGGAAATGTCCGCCCTGAAGGAGAACCTCCTTGCGGACGAA
AAGGAGCCCTGTGCCTGCCCCAGCCGGTCTACACCCAAAGACACATGCAGGCTGCACCAG
GAGAATGATGAGAAGATGTGCAACATGGAGCAGTGGAACCTTTGATAATACCCACGTTCC
TCCTATCTCAGACGCATCCCTTCTCTTTGACCCAGACCCTTTGGGGAAGTGTGGAGATAA
GAGGGGAACAGGCAGAATAGGCAGCTTCCTCCCATAATGTGTTCTGGAAACCTCACAAGA
ATGCCCTAGTGCCCTGCACAGCCTGGGTCTGTGGCTACCTTTTCTGCCACTTCTAGACCC
CATGTTACCCCTGAGGGAAGAAGTCACCTGTAACAGAGCTGCCTGGCATGAAGCTAGTCC
TTGAGGAATCCCCTCATTCATTTCTCCTCAAATCAAGACTGTCATTTCCTCCCTGTTCCC
TCAGGTTCCTCATTTTGCTAGAATCAGCGCCTTGCCCTGAGCATCATTACCACGCACGTT
TTTCAGAGGACAGTGAGTTCCCATTCCTCTCTCTTGACTTGGATCAGCTCTTACGGGAAT
ATGTCAAGGTCCCAGCCTATTCTGCAAGATGCTAATGTTTTATTGAGTTTTGTCCACTTC
CTGCAGTGAAGTGAGCATACTACCATCTCCAGGCCCAAACTCTAAAATAAAGACATGAGC
ACAGCAGTCTCAGTGAGCTCTTGGCGTCTTGCAGACACTTTTGCCCCCTCAAGCCCCAGC
AGTGTATTCATCCCTATTTTCTCTGAATTCTAAAACATATAGGGTCCTCTTCAGGATATA
TAGGGTAGCTAAAATTCCCCAAGCAAGCTTCTGGATTATCTGAATTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               137-306, + strand, RNAz p=0.995738

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-306, + strand, RNAz p=0.995738

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK122925, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK122925, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               137-306, gnl|bosTau2|chr18 (32075419-32075588)
               

               
               137-306, gnl|canFam2|chr5 (80845290-80845465)
               

               
               137-306, gnl|echTel1|scaffold_321190 (81224-81050)
               

               
               137-306, gnl|galGal2|chr11_random (881639-881471)
               

               
               137-306, gnl|hg17|chr16 (70716167-70716342)
               

               
               137-306, gnl|Hg17|chr16 (70716336-70716167)
               

               
               137-306, gnl|loxAfr1|scaffold_699 (123141-123315)
               

               
               137-306, gnl|mm7|chr8 (108137338-108137163)
               

               
               137-306, gnl|Mm7|chr8 (108137167-108137336)
               

               
               137-306, gnl|monDom2|scaffold_23 (1274028-1274203)
               

               
               137-306, gnl|oryCun1|scaffold_177992 (16170-15996)
               

               
               137-306, gnl|panTro1|chr18 (65085265-65085440)
               

               
               137-306, gnl|rheMac2|chr20 (70513870-70513695)
               

               
               137-306, gnl|rn3|chr19 (39411355-39411180)
               


               
               400-1083, gnl|bosTau2|chr18 (32078963-32079664)
               

               
               400-1083, gnl|Hg17|chr16 (70711057-70710406)
               

               
               400-1083, gnl|Mm7|chr8 (108142220-108142827)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-306, gnl|bosTau2|chr18 (32075419-32075588)
               

               
               137-306, gnl|canFam2|chr5 (80845290-80845465)
               

               
               137-306, gnl|echTel1|scaffold_321190 (81224-81050)
               

               
               137-306, gnl|galGal2|chr11_random (881639-881471)
               

               
               137-306, gnl|hg17|chr16 (70716167-70716342)
               

               
               137-306, gnl|Hg17|chr16 (70716336-70716167)
               

               
               137-306, gnl|loxAfr1|scaffold_699 (123141-123315)
               

               
               137-306, gnl|mm7|chr8 (108137338-108137163)
               

               
               137-306, gnl|Mm7|chr8 (108137167-108137336)
               

               
               137-306, gnl|monDom2|scaffold_23 (1274028-1274203)
               

               
               137-306, gnl|oryCun1|scaffold_177992 (16170-15996)
               

               
               137-306, gnl|panTro1|chr18 (65085265-65085440)
               

               
               137-306, gnl|rheMac2|chr20 (70513870-70513695)
               

               
               137-306, gnl|rn3|chr19 (39411355-39411180)
               


               
               400-1083, gnl|bosTau2|chr18 (32078963-32079664)
               

               
               400-1083, gnl|Hg17|chr16 (70711057-70710406)
               

               
               400-1083, gnl|Mm7|chr8 (108142220-108142827)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	137-306, gnl\|bosTau2\|chr18 (32075419-32075588)
	137-306, gnl\|canFam2\|chr5 (80845290-80845465)
	137-306, gnl\|echTel1\|scaffold_321190 (81224-81050)
	137-306, gnl\|galGal2\|chr11_random (881639-881471)
	137-306, gnl\|hg17\|chr16 (70716167-70716342)
	137-306, gnl\|Hg17\|chr16 (70716336-70716167)
	137-306, gnl\|loxAfr1\|scaffold_699 (123141-123315)
	137-306, gnl\|mm7\|chr8 (108137338-108137163)
	137-306, gnl\|Mm7\|chr8 (108137167-108137336)
	137-306, gnl\|monDom2\|scaffold_23 (1274028-1274203)
	137-306, gnl\|oryCun1\|scaffold_177992 (16170-15996)
	137-306, gnl\|panTro1\|chr18 (65085265-65085440)
	137-306, gnl\|rheMac2\|chr20 (70513870-70513695)
	137-306, gnl\|rn3\|chr19 (39411355-39411180)

	400-1083, gnl\|bosTau2\|chr18 (32078963-32079664)
	400-1083, gnl\|Hg17\|chr16 (70711057-70710406)
	400-1083, gnl\|Mm7\|chr8 (108142220-108142827)