Non-Coding RNA Search

Ss1.1-rtes31_o18.5

Sequence:


               
               CTCAACCAGAAAACTGTTATTGGCTACAGCTTCATGGCTCTGCTGACCGTGGGAGGTGAG
CGTCTCTTTTCACTCGTGGCTTTTAAGTGTCCCTGCAGCACAGAGAATGTGGTCTACGGC
TTGGTTTTCCTTTTTGCTCCTGCCTGGGTGTTACTGATCCTGGGGTTCTTTCTGAACAAC
AGGTCCTGGAGACTTTTCACAGGCTGCTGTGTGAATCCCAGGAAAATCTTCCCCAGAGGC
CACAGCTGCCGCTTCTTCTATGTCCTCGGTCAGATCACGCTGAGTTCCTTGGTGGCTCCG
ACCATGTGGCTTTCGGTGGCTTTGCTCAACGGGACTTTTTATGAATGTGCCATGAGCGGG
ACCAGAAGTCCAAAACTCCTGAGGTTGATCTGCAAGGACAAGCCCAAAGAGTGCTGGAAC
GAGCTTCACAAAGTATCTTGTGGGAAAACCAGCATGACCTCCACGGACAGCGAAGAATTG
AAACTGTCCCTGCAAGCCCAGTCCCAGGTAAGAAGGACAGATGTGACTTTTTTTTCCCCA
GCCTGAGAGGCTGAAGTGTTCTCTCTGACCTCCGTTCAGCCAGGGCTGAGTCTGAATCCT
GCTAGAACATTTTGAAACTCAATGGAAATTAGAACACGGTGCAGCCATTAGACAGTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAACCAGAAAACTGTTATTGGCTACAGCTTCATGGCTCTGCTGACCGTGGGAGGTGAG
CGTCTCTTTTCACTCGTGGCTTTTAAGTGTCCCTGCAGCACAGAGAATGTGGTCTACGGC
TTGGTTTTCCTTTTTGCTCCTGCCTGGGTGTTACTGATCCTGGGGTTCTTTCTGAACAAC
AGGTCCTGGAGACTTTTCACAGGCTGCTGTGTGAATCCCAGGAAAATCTTCCCCAGAGGC
CACAGCTGCCGCTTCTTCTATGTCCTCGGTCAGATCACGCTGAGTTCCTTGGTGGCTCCG
ACCATGTGGCTTTCGGTGGCTTTGCTCAACGGGACTTTTTATGAATGTGCCATGAGCGGG
ACCAGAAGTCCAAAACTCCTGAGGTTGATCTGCAAGGACAAGCCCAAAGAGTGCTGGAAC
GAGCTTCACAAAGTATCTTGTGGGAAAACCAGCATGACCTCCACGGACAGCGAAGAATTG
AAACTGTCCCTGCAAGCCCAGTCCCAGGTAAGAAGGACAGATGTGACTTTTTTTTCCCCA
GCCTGAGAGGCTGAAGTGTTCTCTCTGACCTCCGTTCAGCCAGGGCTGAGTCTGAATCCT
GCTAGAACATTTTGAAACTCAATGGAAATTAGAACACGGTGCAGCCATTAGACAGTTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24308454|ref|NP_714922.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24308454|ref|NP_714922.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-359, + strand, RNAz p=0.977725

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-359, + strand, RNAz p=0.977725

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-656, gnl|bosTau2|chr9 (16726886-16727551)
               

               
               1-656, gnl|Hg17|chr6 (116939586-116940236)
               

               
               1-656, gnl|Mm7|chr10 (33877048-33876411)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-656, gnl|bosTau2|chr9 (16726886-16727551)
               

               
               1-656, gnl|Hg17|chr6 (116939586-116940236)
               

               
               1-656, gnl|Mm7|chr10 (33877048-33876411)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               nlu (0.191681)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               nlu (0.191681)

	1-656, gnl\|bosTau2\|chr9 (16726886-16727551)
	1-656, gnl\|Hg17\|chr6 (116939586-116940236)
	1-656, gnl\|Mm7\|chr10 (33877048-33876411)