Non-Coding RNA Search

Ss1.1-rtes31_o22.5

Sequence:


               
               CTGGCCAAGCAGTTCTGGATCGGGGCTTCGATGTATCCCCCCAACGAATCTCAGTTGGTG
CTGTCCAGAGGTAGCAGCCAGCGCCTGCGGGTGGCCCGGGCTTCTAAGAGTAGTGCTCCT
GAGAAAAGTTACTTCCAGCCTTTTTTCCTTGAGAAAAGCAAGAATAGAGATGGAGTTACT
GAAACCCTAAAGATTCAGGAATCTGAGGAGAAAAAAAAGTATCTCCAAAAGGCTAAAAAG
AGAGATGAGATTATCCAACTCTTAAGAAAACAAAGAGAAGAAAGGATCTCGAAAGAACTG
GTCTCCCTTCCTTATAAACCAGAAGCCAAAGTACACAAAGCAAAGAAAGTGATTTCAGAG
TCAGATAAAAAAGACCGCGAAGAAGTCAAAGCCTTGGACTGATCTGACTGACACATGGAA
GAGGTTGGCTCTCTTAGAATCTTCACTTTTGAAACAACCTGCTCATACATCAGGATCACT
GGGATCAGTAGAATTAGACTAAAAAAAATAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGCCAAGCAGTTCTGGATCGGGGCTTCGATGTATCCCCCCAACGAATCTCAGTTGGTG
CTGTCCAGAGGTAGCAGCCAGCGCCTGCGGGTGGCCCGGGCTTCTAAGAGTAGTGCTCCT
GAGAAAAGTTACTTCCAGCCTTTTTTCCTTGAGAAAAGCAAGAATAGAGATGGAGTTACT
GAAACCCTAAAGATTCAGGAATCTGAGGAGAAAAAAAAGTATCTCCAAAAGGCTAAAAAG
AGAGATGAGATTATCCAACTCTTAAGAAAACAAAGAGAAGAAAGGATCTCGAAAGAACTG
GTCTCCCTTCCTTATAAACCAGAAGCCAAAGTACACAAAGCAAAGAAAGTGATTTCAGAG
TCAGATAAAAAAGACCGCGAAGAAGTCAAAGCCTTGGACTGATCTGACTGACACATGGAA
GAGGTTGGCTCTCTTAGAATCTTCACTTTTGAAACAACCTGCTCATACATCAGGATCACT
GGGATCAGTAGAATTAGACTAAAAAAAATAATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PI97_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PI97_HUMAN

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               345-511, gnl|bosTau2|chr25 (5524197-5524032)
               

               
               345-511, gnl|canFam2|chr5 (24543531-24543224)
               

               
               345-511, gnl|dasNov1|scaffold_42049 (6575-6267)
               

               
               345-511, gnl|echTel1|scaffold_177304 (972-647)
               

               
               345-511, gnl|hg17|chr11 (110912544-110912876)
               

               
               345-511, gnl|Hg17|chr11 (110912705-110912878)
               

               
               345-511, gnl|loxAfr1|scaffold_9645 (10223-9887)
               

               
               345-511, gnl|mm7|chr9 (51060264-51059974)
               

               
               345-511, gnl|Mm7|chr9 (51060112-51059907)
               

               
               345-511, gnl|monDom2|scaffold_2 (130476543-130476260)
               

               
               345-511, gnl|oryCun1|scaffold_201279 (20449-20742)
               

               
               345-511, gnl|panTro1|chr9 (112898987-112899319)
               

               
               345-511, gnl|rheMac2|chr14 (109997100-109997432)
               

               
               345-511, gnl|rn3|chr8 (54420143-54419841)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               345-511, gnl|bosTau2|chr25 (5524197-5524032)
               

               
               345-511, gnl|canFam2|chr5 (24543531-24543224)
               

               
               345-511, gnl|dasNov1|scaffold_42049 (6575-6267)
               

               
               345-511, gnl|echTel1|scaffold_177304 (972-647)
               

               
               345-511, gnl|hg17|chr11 (110912544-110912876)
               

               
               345-511, gnl|Hg17|chr11 (110912705-110912878)
               

               
               345-511, gnl|loxAfr1|scaffold_9645 (10223-9887)
               

               
               345-511, gnl|mm7|chr9 (51060264-51059974)
               

               
               345-511, gnl|Mm7|chr9 (51060112-51059907)
               

               
               345-511, gnl|monDom2|scaffold_2 (130476543-130476260)
               

               
               345-511, gnl|oryCun1|scaffold_201279 (20449-20742)
               

               
               345-511, gnl|panTro1|chr9 (112898987-112899319)
               

               
               345-511, gnl|rheMac2|chr14 (109997100-109997432)
               

               
               345-511, gnl|rn3|chr8 (54420143-54419841)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cte (0.58548)
               

               
               tes (0.415628)
               

               
               cmu (0.186393)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.415628)
               

               
               cmu (0.186393)

	345-511, gnl\|bosTau2\|chr25 (5524197-5524032)
	345-511, gnl\|canFam2\|chr5 (24543531-24543224)
	345-511, gnl\|dasNov1\|scaffold_42049 (6575-6267)
	345-511, gnl\|echTel1\|scaffold_177304 (972-647)
	345-511, gnl\|hg17\|chr11 (110912544-110912876)
	345-511, gnl\|Hg17\|chr11 (110912705-110912878)
	345-511, gnl\|loxAfr1\|scaffold_9645 (10223-9887)
	345-511, gnl\|mm7\|chr9 (51060264-51059974)
	345-511, gnl\|Mm7\|chr9 (51060112-51059907)
	345-511, gnl\|monDom2\|scaffold_2 (130476543-130476260)
	345-511, gnl\|oryCun1\|scaffold_201279 (20449-20742)
	345-511, gnl\|panTro1\|chr9 (112898987-112899319)
	345-511, gnl\|rheMac2\|chr14 (109997100-109997432)
	345-511, gnl\|rn3\|chr8 (54420143-54419841)