Ss1.1-rtes33_a11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAACAGTCGCCTGTGCATGCAGATCAAGAACCTGGAGCGCAGCGGAAACCAGCACAAG GCGGAAGTGGAGGCCATCATGGAGCAGCTGAAGGAGCTGAAGCAGAAGGGAGATCGGGAC AAGGAGTCCCTGAAGAAGGCCATCCGGGCCCAGAAGGAGCGCGCCGAGAAGAGCGAGGAG TACGCTGAGCAGCTGCACGTGCAACTTGCTGACAAGGATCTTTATGTCGCTGAAGCTCTG TCCACTCTGGAATCATGGAGGAGCCGCTACAACCAAGTCGTGAAAGACAAGGGAGACCTC GAGCTGGAAATTATCGTCCTGAACGACCGGGTGACAGATCTCGTAAACCAACAACAAACC TTGGAGGAGAAGATGCGGGAAGACCGGGACAGCCTGGTGGAGAGACTACACCGGCAGACC GCCGAGTATTCCGCATTCAAGCTAGAGAACGAGAGGCTGAAGGCTAGCTTCGCCCCGATG GAGGACAAACTCAATCAGGCGCACATCGAGGTTCAGCAGCTGAAGGCATCGGTGAAGAAC TACGAGGGAATGATTGACAACTATAAGAGTCAGGTGATGAAGACCAGACTGGAGGCTGAT GAGGTGGCTGCCCAGCTGGAACGCTGTGACAAAGAGAACAAGATCCTTAAAGACGAGATG AACAAAGAGATTGAAGCGGCACGGAGGCAGTTCCAGTCCCAGCTGGCTGACCTGCAGCAG CTGCCCGACATCCTCAAGATCACGGAGGCCAAGCTGGCAGAGTGCCAGGACCAGCTGCAG GGCTACGAGAGGAAGAACATCGACCTCACGGCCATCATATCAGACCTGCGCAGCCGGGTA AGGGACTGGCAGAAAGGGTCCCACGAACTGGCCCGAGCAGGGGCCCGCTTACCAAGATGA GCCGCACGCGCCCCCCCCCAAGGGAGGACCACTTCCTTTTTCTTGGCTGCCGCTTTCTGA AAGGAGTGAGCTGTCATCAGTGCTGTGAAATAAAAGTCTGGTGTGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAACAGTCGCCTGTGCATGCAGATCAAGAACCTGGAGCGCAGCGGAAACCAGCACAAG GCGGAAGTGGAGGCCATCATGGAGCAGCTGAAGGAGCTGAAGCAGAAGGGAGATCGGGAC AAGGAGTCCCTGAAGAAGGCCATCCGGGCCCAGAAGGAGCGCGCCGAGAAGAGCGAGGAG TACGCTGAGCAGCTGCACGTGCAACTTGCTGACAAGGATCTTTATGTCGCTGAAGCTCTG TCCACTCTGGAATCATGGAGGAGCCGCTACAACCAAGTCGTGAAAGACAAGGGAGACCTC GAGCTGGAAATTATCGTCCTGAACGACCGGGTGACAGATCTCGTAAACCAACAACAAACC TTGGAGGAGAAGATGCGGGAAGACCGGGACAGCCTGGTGGAGAGACTACACCGGCAGACC GCCGAGTATTCCGCATTCAAGCTAGAGAACGAGAGGCTGAAGGCTAGCTTCGCCCCGATG GAGGACAAACTCAATCAGGCGCACATCGAGGTTCAGCAGCTGAAGGCATCGGTGAAGAAC TACGAGGGAATGATTGACAACTATAAGAGTCAGGTGATGAAGACCAGACTGGAGGCTGAT GAGGTGGCTGCCCAGCTGGAACGCTGTGACAAAGAGAACAAGATCCTTAAAGACGAGATG AACAAAGAGATTGAAGCGGCACGGAGGCAGTTCCAGTCCCAGCTGGCTGACCTGCAGCAG CTGCCCGACATCCTCAAGATCACGGAGGCCAAGCTGGCAGAGTGCCAGGACCAGCTGCAG GGCTACGAGAGGAAGAACATCGACCTCACGGCCATCATATCAGACCTGCGCAGCCGGGTA AGGGACTGGCAGAAAGGGTCCCACGAACTGGCCCGAGCAGGGGCCCGCTTACCAAGATGA GCCGCACGCGCCCCCCCCCAAGGGAGGACCACTTCCTTTTTCTTGGCTGCCGCTTTCTGA AAGGAGTGAGCTGTCATCAGTGCTGTGAAATAAAAGTCTGGTGTGCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 717-836, - strand, RNAz p=0.597391 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 717-836, - strand, RNAz p=0.597391 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 29-217, gnl|bosTau2|chr11 (78342364-78342552) | |
| 29-217, gnl|canFam2|chr9 (58417978-58417774) | |
| 29-217, gnl|danRer3|chrUn (145313947-145313758) | |
| 29-217, gnl|echTel1|scaffold_303808 (51636-51840) | |
| 29-217, gnl|hg17|chr9 (128326518-128326722) | |
| 29-217, gnl|Hg17|chr9 (128326532-128326720) | |
| 29-217, gnl|mm7|chr2 (29922029-29922233) | |
| 29-217, gnl|Mm7|chr2 (29922043-29922231) | |
| 29-217, gnl|monDom2|scaffold_51 (3026813-3027003) | |
| 29-217, gnl|oryCun1|scaffold_159051 (14216-14420) | |
| 29-217, gnl|panTro1|chr11 (113159200-113159404) | |
| 29-217, gnl|rheMac2|chr15 (10382762-10382558) | |
| 29-217, gnl|rn3|chr3 (8903279-8903483) | |
| 327-463, gnl|bosTau2|chr11 (78344550-78344686) | |
| 327-463, gnl|canFam2|chr9 (58415502-58415330) | |
| 327-463, gnl|danRer3|chrUn (145311362-145311196) | |
| 327-463, gnl|echTel1|scaffold_303808 (53999-54173) | |
| 327-463, gnl|hg17|chr9 (128329689-128329861) | |
| 327-463, gnl|Hg17|chr9 (128329723-128329859) | |
| 327-463, gnl|loxAfr1|scaffold_17207 (16056-15890) | |
| 327-463, gnl|mm7|chr2 (29924899-29925059) | |
| 327-463, gnl|Mm7|chr2 (29924921-29925057) | |
| 327-463, gnl|monDom2|scaffold_51 (3046243-3046410) | |
| 327-463, gnl|oryCun1|scaffold_159051 (16458-16633) | |
| 327-463, gnl|panTro1|chr11 (113162375-113162547) | |
| 327-463, gnl|rheMac2|chr15 (10379961-10379789) | |
| 327-463, gnl|rn3|chr3 (8906357-8906519) | |
| 678-1008, gnl|bosTau2|chr11 (78348293-78348631) | |
| 678-1008, gnl|Hg17|chr9 (128336342-128336667) | |
| 678-1008, gnl|Mm7|chr2 (29929523-29929848) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-217, gnl|bosTau2|chr11 (78342364-78342552) | |
| 29-217, gnl|canFam2|chr9 (58417978-58417774) | |
| 29-217, gnl|danRer3|chrUn (145313947-145313758) | |
| 29-217, gnl|echTel1|scaffold_303808 (51636-51840) | |
| 29-217, gnl|hg17|chr9 (128326518-128326722) | |
| 29-217, gnl|Hg17|chr9 (128326532-128326720) | |
| 29-217, gnl|mm7|chr2 (29922029-29922233) | |
| 29-217, gnl|Mm7|chr2 (29922043-29922231) | |
| 29-217, gnl|monDom2|scaffold_51 (3026813-3027003) | |
| 29-217, gnl|oryCun1|scaffold_159051 (14216-14420) | |
| 29-217, gnl|panTro1|chr11 (113159200-113159404) | |
| 29-217, gnl|rheMac2|chr15 (10382762-10382558) | |
| 29-217, gnl|rn3|chr3 (8903279-8903483) | |
| 327-463, gnl|bosTau2|chr11 (78344550-78344686) | |
| 327-463, gnl|canFam2|chr9 (58415502-58415330) | |
| 327-463, gnl|danRer3|chrUn (145311362-145311196) | |
| 327-463, gnl|echTel1|scaffold_303808 (53999-54173) | |
| 327-463, gnl|hg17|chr9 (128329689-128329861) | |
| 327-463, gnl|Hg17|chr9 (128329723-128329859) | |
| 327-463, gnl|loxAfr1|scaffold_17207 (16056-15890) | |
| 327-463, gnl|mm7|chr2 (29924899-29925059) | |
| 327-463, gnl|Mm7|chr2 (29924921-29925057) | |
| 327-463, gnl|monDom2|scaffold_51 (3046243-3046410) | |
| 327-463, gnl|oryCun1|scaffold_159051 (16458-16633) | |
| 327-463, gnl|panTro1|chr11 (113162375-113162547) | |
| 327-463, gnl|rheMac2|chr15 (10379961-10379789) | |
| 327-463, gnl|rn3|chr3 (8906357-8906519) | |
| 678-1008, gnl|bosTau2|chr11 (78348293-78348631) | |
| 678-1008, gnl|Hg17|chr9 (128336342-128336667) | |
| 678-1008, gnl|Mm7|chr2 (29929523-29929848) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.831255) | |
| liv (0.146284) | |
| cst (0.140036) |