Ss1.1-rtes33_o7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACATCACAGATCCTGTTTCAGCACCTTGTGCACCACCACTGCAGCCAAAGGGTGGACAA ACAGGGCCCCTGGGGCCTCCGGCTGCTCCCCCTTCATTCCGCCCTGAAGATGAGCTCGAG CACCTGACCAAGAAGATGTTGTATGACATGGAAAATCCACCCGCCGACGAATACTTTGGC CGCTGTGCTCGCTGTGGGGAAAACGTCGTTGGGGAAGGTACAGGATGCACTGCCATGGAT CAGGTCTTCCACGTAGATTGTTTTACCTGCATCATCTGTAACAACAAGCTCCGAGGGCAG CCCTTCTATGCTGTAGAGAAGAAAGCCTATTGCGAGCCCTGCTACATTAATACCCTGGAG CAGTGCAGCGTGTGCTCCAAGCCCATCATGGAGCGGATTCTGCGAGCCACTGGGAAGGCC TATCATCCACATTGCTTTACCTGTGTGATGTGCCACCGCAGCCTGGATGGGATTCCGTTC ACCGTGGATGCTGGCGGCCTCATCCACTGCATTGAGGACTTCCACAAGAAATTTGCCCCC CGCTGTTCTGTGTGCAAGGAGCCTATCATGCCGGCCCCTGGCCAGGAGGAGACTGTCCGC ATCGTGGCTCTGGATCGTGATTTCCATGTTCACTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACATCACAGATCCTGTTTCAGCACCTTGTGCACCACCACTGCAGCCAAAGGGTGGACAA ACAGGGCCCCTGGGGCCTCCGGCTGCTCCCCCTTCATTCCGCCCTGAAGATGAGCTCGAG CACCTGACCAAGAAGATGTTGTATGACATGGAAAATCCACCCGCCGACGAATACTTTGGC CGCTGTGCTCGCTGTGGGGAAAACGTCGTTGGGGAAGGTACAGGATGCACTGCCATGGAT CAGGTCTTCCACGTAGATTGTTTTACCTGCATCATCTGTAACAACAAGCTCCGAGGGCAG CCCTTCTATGCTGTAGAGAAGAAAGCCTATTGCGAGCCCTGCTACATTAATACCCTGGAG CAGTGCAGCGTGTGCTCCAAGCCCATCATGGAGCGGATTCTGCGAGCCACTGGGAAGGCC TATCATCCACATTGCTTTACCTGTGTGATGTGCCACCGCAGCCTGGATGGGATTCCGTTC ACCGTGGATGCTGGCGGCCTCATCCACTGCATTGAGGACTTCCACAAGAAATTTGCCCCC CGCTGTTCTGTGTGCAAGGAGCCTATCATGCCGGCCCCTGGCCAGGAGGAGACTGTCCGC ATCGTGGCTCTGGATCGTGATTTCCATGTTCACTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 409-528, + strand, RNAz p=0.844284 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 409-528, + strand, RNAz p=0.844284 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 178-347, gnl|bosTau2|chr1 (48873658-48873827) | |
| 178-347, gnl|canFam2|chr34 (24047433-24047649) | |
| 178-347, gnl|danRer3|chr6 (17518822-17518629) | |
| 178-347, gnl|dasNov1|scaffold_516 (122267-122485) | |
| 178-347, gnl|echTel1|scaffold_313721 (43169-42955) | |
| 178-347, gnl|fr1|chrUn (43521490-43521702) | |
| 178-347, gnl|galGal2|chr9 (13773308-13773090) | |
| 178-347, gnl|hg17|chr3 (189960569-189960781) | |
| 178-347, gnl|Hg17|chr3 (189960602-189960771) | |
| 178-347, gnl|loxAfr1|scaffold_29626 (8197-8412) | |
| 178-347, gnl|mm7|chr16 (24550066-24550284) | |
| 178-347, gnl|Mm7|chr16 (24550104-24550273) | |
| 178-347, gnl|monDom2|scaffold_92 (202563-202750) | |
| 178-347, gnl|oryCun1|scaffold_199023 (700881-701094) | |
| 178-347, gnl|panTro1|chr2 (194046051-194046263) | |
| 178-347, gnl|rheMac2|chr2 (181090627-181090848) | |
| 178-347, gnl|rn3|chr11 (78126718-78126500) | |
| 178-347, gnl|tetNig1|chrUn_random (155753622-155753802) | |
| 178-347, gnl|xenTro1|scaffold_148 (1793718-1793531) | |
| 349-528, gnl|bosTau2|chr1 (48979539-48979718) | |
| 349-528, gnl|Hg17|chr3 (190066690-190066869) | |
| 349-528, gnl|Mm7|chr16 (24632146-24632325) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-347, gnl|bosTau2|chr1 (48873658-48873827) | |
| 178-347, gnl|canFam2|chr34 (24047433-24047649) | |
| 178-347, gnl|danRer3|chr6 (17518822-17518629) | |
| 178-347, gnl|dasNov1|scaffold_516 (122267-122485) | |
| 178-347, gnl|echTel1|scaffold_313721 (43169-42955) | |
| 178-347, gnl|fr1|chrUn (43521490-43521702) | |
| 178-347, gnl|galGal2|chr9 (13773308-13773090) | |
| 178-347, gnl|hg17|chr3 (189960569-189960781) | |
| 178-347, gnl|Hg17|chr3 (189960602-189960771) | |
| 178-347, gnl|loxAfr1|scaffold_29626 (8197-8412) | |
| 178-347, gnl|mm7|chr16 (24550066-24550284) | |
| 178-347, gnl|Mm7|chr16 (24550104-24550273) | |
| 178-347, gnl|monDom2|scaffold_92 (202563-202750) | |
| 178-347, gnl|oryCun1|scaffold_199023 (700881-701094) | |
| 178-347, gnl|panTro1|chr2 (194046051-194046263) | |
| 178-347, gnl|rheMac2|chr2 (181090627-181090848) | |
| 178-347, gnl|rn3|chr11 (78126718-78126500) | |
| 178-347, gnl|tetNig1|chrUn_random (155753622-155753802) | |
| 178-347, gnl|xenTro1|scaffold_148 (1793718-1793531) | |
| 349-528, gnl|bosTau2|chr1 (48979539-48979718) | |
| 349-528, gnl|Hg17|chr3 (190066690-190066869) | |
| 349-528, gnl|Mm7|chr16 (24632146-24632325) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| tes (0.207814) | |
| cty (0.10408) |