Ss1.1-rtes34_g13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCGGCGAGGGCGCAGGTGGCTGGTACTGTCTCAGGCCCATCTCGACGTCCGGCAGCGT TCACCATGCCAAACCGCAGGGGCAGCCGCAATGCCTACTATTTCTTCGTGCAGGAAAAGA TCCCTGAACTACGTAGAAGAGGCCTGCCGGTGGCTCGTGTCGCTGATGCCATCCCTTACT GCTCTGCTGACTGGGCGCTACTGAGGGAGGAGGAAAAGGAGAAATACTCAGAAATGGCTC GAGAGTGGAAGGCCGCCCAGGGGAAGGACGCTGGGCCTTGGGAGAAGCAGAAACCTGTTT CTACTCCTCTGAGGAGGCCAGCAATGCTTGTACCAAAGCAGAATGTTTCACCTCCAGATA TGTCATGCTTGTCTTTAAAAAGTGATCAAGCTCTCCTTGGAGGTATTTTTTATTTTTTGA ACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAACAGCGCTTCCTCCCTTGTGAAA TAGGCTGTGTTAAATACTCTCTCCAAGAAGGTATTATGGCAGATTTCCACAGTTTTATAA ATCCTGGTGAAATTCCACGAGGATTTCGATTTCATTGTCAGGCTGCCAGTGATTCTAGTC ACAAGATTCCTATTTCACATTTTGAATCTGGGCATGATCAAGCAACTGTGTTACAAAACC TTTATAGATTTATTCGTCCAAACTCAGGGAAGTGGCCACCTATTTACTGCAAGTCTGATG ATAGAGCCAGAGTCAACTGGTGTTTGAAGTATATGGCAAAGTCATCAGAAATCAGGCAAG ATCTAGAACTTGTCACTGTAGAGGATCTTGTGGTAGGGATCTACCAGCAAAAATTTCTCA AGGAGCCCTCTAAGACCTGGGTTCGGAGCCTCCTAGATGTGGCCATGTGGGATTATTCCA GCAACACCAGGTGCAAGTGGCATGAAGAAAATGATATCCTCTTCTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCGGCGAGGGCGCAGGTGGCTGGTACTGTCTCAGGCCCATCTCGACGTCCGGCAGCGT TCACCATGCCAAACCGCAGGGGCAGCCGCAATGCCTACTATTTCTTCGTGCAGGAAAAGA TCCCTGAACTACGTAGAAGAGGCCTGCCGGTGGCTCGTGTCGCTGATGCCATCCCTTACT GCTCTGCTGACTGGGCGCTACTGAGGGAGGAGGAAAAGGAGAAATACTCAGAAATGGCTC GAGAGTGGAAGGCCGCCCAGGGGAAGGACGCTGGGCCTTGGGAGAAGCAGAAACCTGTTT CTACTCCTCTGAGGAGGCCAGCAATGCTTGTACCAAAGCAGAATGTTTCACCTCCAGATA TGTCATGCTTGTCTTTAAAAAGTGATCAAGCTCTCCTTGGAGGTATTTTTTATTTTTTGA ACATTTTTAGCCATGGCGAGCTACCTCCTCATTGTGAACAGCGCTTCCTCCCTTGTGAAA TAGGCTGTGTTAAATACTCTCTCCAAGAAGGTATTATGGCAGATTTCCACAGTTTTATAA ATCCTGGTGAAATTCCACGAGGATTTCGATTTCATTGTCAGGCTGCCAGTGATTCTAGTC ACAAGATTCCTATTTCACATTTTGAATCTGGGCATGATCAAGCAACTGTGTTACAAAACC TTTATAGATTTATTCGTCCAAACTCAGGGAAGTGGCCACCTATTTACTGCAAGTCTGATG ATAGAGCCAGAGTCAACTGGTGTTTGAAGTATATGGCAAAGTCATCAGAAATCAGGCAAG ATCTAGAACTTGTCACTGTAGAGGATCTTGTGGTAGGGATCTACCAGCAAAAATTTCTCA AGGAGCCCTCTAAGACCTGGGTTCGGAGCCTCCTAGATGTGGCCATGTGGGATTATTCCA GCAACACCAGGTGCAAGTGGCATGAAGAAAATGATATCCTCTTCTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 345-464, - strand, RNAz p=0.834264 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 345-464, - strand, RNAz p=0.834264 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-210, gnl|bosTau2|chr3 (3073507-3073298) | |
| 1-210, gnl|canFam2|chr7 (34363298-34362808) | |
| 1-210, gnl|dasNov1|scaffold_105802 (4289-3837) | |
| 1-210, gnl|echTel1|scaffold_306684 (7741-8214) | |
| 1-210, gnl|hg17|chr1 (163689977-163690424) | |
| 1-210, gnl|Hg17|chr1 (163690188-163690396) | |
| 1-210, gnl|mm7|chr1 (166209670-166209226) | |
| 1-210, gnl|Mm7|chr1 (166209439-166209238) | |
| 1-210, gnl|monDom2|scaffold_16 (17625126-17625596) | |
| 1-210, gnl|oryCun1|scaffold_89796 (10906-10470) | |
| 1-210, gnl|panTro1|chr1 (145930414-145930856) | |
| 1-210, gnl|rheMac2|chr1 (196707817-196708265) | |
| 1-210, gnl|rn3|chr13 (81989425-81988980) | |
| 325-548, gnl|bosTau2|chr3 (3070737-3070514) | |
| 325-548, gnl|Hg17|chr1 (163693496-163693738) | |
| 325-548, gnl|Mm7|chr1 (166206291-166206111) | |
| 589-713, gnl|bosTau2|chr3 (3048801-3048677) | |
| 589-713, gnl|canFam2|chr7 (34349858-34349527) | |
| 589-713, gnl|echTel1|scaffold_166011 (2523-2811) | |
| 589-713, gnl|hg17|chr1 (163705008-163705337) | |
| 589-713, gnl|Hg17|chr1 (163705075-163705199) | |
| 589-713, gnl|mm7|chr1 (166197471-166197154) | |
| 589-713, gnl|Mm7|chr1 (166197402-166197278) | |
| 589-713, gnl|monDom2|scaffold_16 (17635212-17635496) | |
| 589-713, gnl|panTro1|chr1 (145945603-145945935) | |
| 589-713, gnl|rheMac2|chr1 (196723422-196723746) | |
| 589-713, gnl|rn3|chr13 (81964062-81963737) | |
| 767-912, gnl|bosTau2|chr3 (3047715-3047570) | |
| 767-912, gnl|canFam2|chr7 (34349267-34348648) | |
| 767-912, gnl|dasNov1|scaffold_99087 (7202-6609) | |
| 767-912, gnl|echTel1|scaffold_166011 (3831-4391) | |
| 767-912, gnl|hg17|chr1 (163705614-163706254) | |
| 767-912, gnl|Hg17|chr1 (163706149-163706294) | |
| 767-912, gnl|mm7|chr1 (166196908-166196342) | |
| 767-912, gnl|Mm7|chr1 (166196445-166196300) | |
| 767-912, gnl|monDom2|scaffold_16 (17635761-17636281) | |
| 767-912, gnl|oryCun1|scaffold_214561 (35829-35218) | |
| 767-912, gnl|panTro1|chr1 (145946212-145946852) | |
| 767-912, gnl|rheMac2|chr1 (196724018-196724650) | |
| 767-912, gnl|rn3|chr13 (81963495-81962929) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-210, gnl|bosTau2|chr3 (3073507-3073298) | |
| 1-210, gnl|canFam2|chr7 (34363298-34362808) | |
| 1-210, gnl|dasNov1|scaffold_105802 (4289-3837) | |
| 1-210, gnl|echTel1|scaffold_306684 (7741-8214) | |
| 1-210, gnl|hg17|chr1 (163689977-163690424) | |
| 1-210, gnl|Hg17|chr1 (163690188-163690396) | |
| 1-210, gnl|mm7|chr1 (166209670-166209226) | |
| 1-210, gnl|Mm7|chr1 (166209439-166209238) | |
| 1-210, gnl|monDom2|scaffold_16 (17625126-17625596) | |
| 1-210, gnl|oryCun1|scaffold_89796 (10906-10470) | |
| 1-210, gnl|panTro1|chr1 (145930414-145930856) | |
| 1-210, gnl|rheMac2|chr1 (196707817-196708265) | |
| 1-210, gnl|rn3|chr13 (81989425-81988980) | |
| 325-548, gnl|bosTau2|chr3 (3070737-3070514) | |
| 325-548, gnl|Hg17|chr1 (163693496-163693738) | |
| 325-548, gnl|Mm7|chr1 (166206291-166206111) | |
| 589-713, gnl|bosTau2|chr3 (3048801-3048677) | |
| 589-713, gnl|canFam2|chr7 (34349858-34349527) | |
| 589-713, gnl|echTel1|scaffold_166011 (2523-2811) | |
| 589-713, gnl|hg17|chr1 (163705008-163705337) | |
| 589-713, gnl|Hg17|chr1 (163705075-163705199) | |
| 589-713, gnl|mm7|chr1 (166197471-166197154) | |
| 589-713, gnl|Mm7|chr1 (166197402-166197278) | |
| 589-713, gnl|monDom2|scaffold_16 (17635212-17635496) | |
| 589-713, gnl|panTro1|chr1 (145945603-145945935) | |
| 589-713, gnl|rheMac2|chr1 (196723422-196723746) | |
| 589-713, gnl|rn3|chr13 (81964062-81963737) | |
| 767-912, gnl|bosTau2|chr3 (3047715-3047570) | |
| 767-912, gnl|canFam2|chr7 (34349267-34348648) | |
| 767-912, gnl|dasNov1|scaffold_99087 (7202-6609) | |
| 767-912, gnl|echTel1|scaffold_166011 (3831-4391) | |
| 767-912, gnl|hg17|chr1 (163705614-163706254) | |
| 767-912, gnl|Hg17|chr1 (163706149-163706294) | |
| 767-912, gnl|mm7|chr1 (166196908-166196342) | |
| 767-912, gnl|Mm7|chr1 (166196445-166196300) | |
| 767-912, gnl|monDom2|scaffold_16 (17635761-17636281) | |
| 767-912, gnl|oryCun1|scaffold_214561 (35829-35218) | |
| 767-912, gnl|panTro1|chr1 (145946212-145946852) | |
| 767-912, gnl|rheMac2|chr1 (196724018-196724650) | |
| 767-912, gnl|rn3|chr13 (81963495-81962929) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |