Non-Coding RNA Search

Ss1.1-rtes34_g23.5

Sequence:


               
               TGGAGGAATACTTACTTCATGGCAGTTTTATTCTGTGAAGCTCCTCAGATATGTTAGCAA
CTATGATTATTTTATTGCTTCCTGTGAAATCACATTTTGTATTTTTCTTATTGTCTTCAC
AACACAGGAAATCCAAAAAATGAGAGAATTTAAATCTGCCTATTTCCAAAGTATTTGGAA
TTGGCTAGAATTACTACTTTTGGTGTTGTGTTTTGTGGCCATTGCCTTCAACGTGTACTG
TAATATACAAATTTCTCTCTTGCTTGGACAGCTGTTAAAAAATACTGAAAAATATTCAGA
CTTCTATTTTCTTGCATACTGGCACATTTATTACAACAATATAATTGCCATAACCATCTT
CTTTGCATGGATAAAGATATTCAAATTCATAAGCTTTAACAAGACAATGTCTCAGCTGTC
ATCGACTCTGTCCCGCTGTATGAAAGATATAGTAGGATTTGCCATCATGTTTTTTATAAT
ATTCTTTGCTTACGCCCAGTTGGGATTTCTTGTTTTTGGATCACAGGTTGATGACTTTTC
CACTTTTCAAAATTCCATATTTGCACAGTTTCGAATTATTCTTGGAGATTTTAATTTTGC
TGGTATTCAACAAGCCAATCGTATCTTGGGACCCATTTACTTCATCACTTTCATCTTTTT
CGTGTTCTTTGTCCTGCTGAACATGTTCTTGGCAATAATTAATGATACCTATGCTGAAGT
AAAAGCTGACTACTCAATAGGCAGAAGGCCAGATTTTGAACTTGGTAAAATGATTAAAAA
GAGTTACAACAATGCCCTCGAAAAACTCAAACTAAAGAAAGCTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGGAATACTTACTTCATGGCAGTTTTATTCTGTGAAGCTCCTCAGATATGTTAGCAA
CTATGATTATTTTATTGCTTCCTGTGAAATCACATTTTGTATTTTTCTTATTGTCTTCAC
AACACAGGAAATCCAAAAAATGAGAGAATTTAAATCTGCCTATTTCCAAAGTATTTGGAA
TTGGCTAGAATTACTACTTTTGGTGTTGTGTTTTGTGGCCATTGCCTTCAACGTGTACTG
TAATATACAAATTTCTCTCTTGCTTGGACAGCTGTTAAAAAATACTGAAAAATATTCAGA
CTTCTATTTTCTTGCATACTGGCACATTTATTACAACAATATAATTGCCATAACCATCTT
CTTTGCATGGATAAAGATATTCAAATTCATAAGCTTTAACAAGACAATGTCTCAGCTGTC
ATCGACTCTGTCCCGCTGTATGAAAGATATAGTAGGATTTGCCATCATGTTTTTTATAAT
ATTCTTTGCTTACGCCCAGTTGGGATTTCTTGTTTTTGGATCACAGGTTGATGACTTTTC
CACTTTTCAAAATTCCATATTTGCACAGTTTCGAATTATTCTTGGAGATTTTAATTTTGC
TGGTATTCAACAAGCCAATCGTATCTTGGGACCCATTTACTTCATCACTTTCATCTTTTT
CGTGTTCTTTGTCCTGCTGAACATGTTCTTGGCAATAATTAATGATACCTATGCTGAAGT
AAAAGCTGACTACTCAATAGGCAGAAGGCCAGATTTTGAACTTGGTAAAATGATTAAAAA
GAGTTACAACAATGCCCTCGAAAAACTCAAACTAAAGAAAGCTCAAAA

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-205, gnl|bosTau2|chr7 (34483279-34483483)
               

               
               1-205, gnl|canFam2|chr11 (28619163-28619354)
               

               
               1-205, gnl|danRer3|chr1 (49638342-49638152)
               

               
               1-205, gnl|dasNov1|scaffold_66467 (7500-7686)
               

               
               1-205, gnl|echTel1|scaffold_313105 (42972-42796)
               

               
               1-205, gnl|fr1|chrUn (245174149-245174334)
               

               
               1-205, gnl|galGal2|chr13 (13183892-13183699)
               

               
               1-205, gnl|hg17|chr5 (137269786-137269977)
               

               
               1-205, gnl|Hg17|chr5 (137269818-137270022)
               

               
               1-205, gnl|loxAfr1|scaffold_205961 (405-211)
               

               
               1-205, gnl|mm7|chr18 (34800473-34800664)
               

               
               1-205, gnl|Mm7|chr18 (34800505-34800709)
               

               
               1-205, gnl|monDom2|scaffold_6 (71671026-71670835)
               

               
               1-205, gnl|oryCun1|scaffold_106052 (3374-3183)
               

               
               1-205, gnl|panTro1|chr4 (143873200-143873391)
               

               
               1-205, gnl|rheMac2|chr6 (134315196-134315387)
               

               
               1-205, gnl|rn3|chr18 (26921213-26921404)
               

               
               1-205, gnl|tetNig1|chr18 (6520918-6521085)
               

               
               1-205, gnl|xenTro1|scaffold_228 (1133070-1133261)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-205, gnl|bosTau2|chr7 (34483279-34483483)
               

               
               1-205, gnl|canFam2|chr11 (28619163-28619354)
               

               
               1-205, gnl|danRer3|chr1 (49638342-49638152)
               

               
               1-205, gnl|dasNov1|scaffold_66467 (7500-7686)
               

               
               1-205, gnl|echTel1|scaffold_313105 (42972-42796)
               

               
               1-205, gnl|fr1|chrUn (245174149-245174334)
               

               
               1-205, gnl|galGal2|chr13 (13183892-13183699)
               

               
               1-205, gnl|hg17|chr5 (137269786-137269977)
               

               
               1-205, gnl|Hg17|chr5 (137269818-137270022)
               

               
               1-205, gnl|loxAfr1|scaffold_205961 (405-211)
               

               
               1-205, gnl|mm7|chr18 (34800473-34800664)
               

               
               1-205, gnl|Mm7|chr18 (34800505-34800709)
               

               
               1-205, gnl|monDom2|scaffold_6 (71671026-71670835)
               

               
               1-205, gnl|oryCun1|scaffold_106052 (3374-3183)
               

               
               1-205, gnl|panTro1|chr4 (143873200-143873391)
               

               
               1-205, gnl|rheMac2|chr6 (134315196-134315387)
               

               
               1-205, gnl|rn3|chr18 (26921213-26921404)
               

               
               1-205, gnl|tetNig1|chr18 (6520918-6521085)
               

               
               1-205, gnl|xenTro1|scaffold_228 (1133070-1133261)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (1.4547)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.4547)

	1-205, gnl\|bosTau2\|chr7 (34483279-34483483)
	1-205, gnl\|canFam2\|chr11 (28619163-28619354)
	1-205, gnl\|danRer3\|chr1 (49638342-49638152)
	1-205, gnl\|dasNov1\|scaffold_66467 (7500-7686)
	1-205, gnl\|echTel1\|scaffold_313105 (42972-42796)
	1-205, gnl\|fr1\|chrUn (245174149-245174334)
	1-205, gnl\|galGal2\|chr13 (13183892-13183699)
	1-205, gnl\|hg17\|chr5 (137269786-137269977)
	1-205, gnl\|Hg17\|chr5 (137269818-137270022)
	1-205, gnl\|loxAfr1\|scaffold_205961 (405-211)
	1-205, gnl\|mm7\|chr18 (34800473-34800664)
	1-205, gnl\|Mm7\|chr18 (34800505-34800709)
	1-205, gnl\|monDom2\|scaffold_6 (71671026-71670835)
	1-205, gnl\|oryCun1\|scaffold_106052 (3374-3183)
	1-205, gnl\|panTro1\|chr4 (143873200-143873391)
	1-205, gnl\|rheMac2\|chr6 (134315196-134315387)
	1-205, gnl\|rn3\|chr18 (26921213-26921404)
	1-205, gnl\|tetNig1\|chr18 (6520918-6521085)
	1-205, gnl\|xenTro1\|scaffold_228 (1133070-1133261)