Non-Coding RNA Search

Ss1.1-rtes36_d9.5

Sequence:


               
               ACTCATAAAATCTCTGGAAAAGAAGTTAATGGTAACCAGGTGAGGGGAAAAAGAGAAAGT
GACAGCGAAGACAGCAAAAGGAACCACTACCCTAGAGGTTACCGTTCTATTCCAGGTGAT
GCTATAGATCTGAATGATCATACCGGACAGGCACCCCAAACAGCTTTCTCTTTGCCTGCT
AACTGCACCTGGAAACCAAAGTGGTTTTGTGCTACATGGGGTCCCTCTGCAGAAAATGAA
AATCAGGCATTACCTCCTAAAGGTAACCTCAAGGGCCAGCTCAGAGAGAATCCAGTCAGA
ACCCTTCCTCCTTCACCGGGAGACTTCCAACCACCTGACATTCCAGACACTCCTGATTCT
TTGGGAGTGTTGTCCTTTGAATCTGAGTTGGTCAGAACCTGTGACAACCCTGCTGCGAGT
CCTCCACAACATTCTGTGTCACTGACAAACAACCTCATTAGTAGGCGGGCTCCCACCGAC
CTTCAAATCTGAATGGCTGTTGGCTTTTAGACAGTCTACATATTACATTATTACAGAAGT
AGCCTAGTGACCGTGAAGCAGACAGAACAGATAAGGGCAGCTAGGAAGACCAGATGTTTA
GCCAGACAACTGCAAACCCATTTAAAAAAGGGAAAATGGCTCTAATTCTGAACTGGGAAA
GGAATAGTTTCAAGTGCAAACACAGTTACCAAATTGGGATTACTTTTTCACGGGCTCTCT
TCAAAATATGTGATAACTAATTTTGGGAAAAATCACATGTTCAGAATCGAAGCTAAATGG
AACCAGGTTTTTCCTTGAAGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCATAAAATCTCTGGAAAAGAAGTTAATGGTAACCAGGTGAGGGGAAAAAGAGAAAGT
GACAGCGAAGACAGCAAAAGGAACCACTACCCTAGAGGTTACCGTTCTATTCCAGGTGAT
GCTATAGATCTGAATGATCATACCGGACAGGCACCCCAAACAGCTTTCTCTTTGCCTGCT
AACTGCACCTGGAAACCAAAGTGGTTTTGTGCTACATGGGGTCCCTCTGCAGAAAATGAA
AATCAGGCATTACCTCCTAAAGGTAACCTCAAGGGCCAGCTCAGAGAGAATCCAGTCAGA
ACCCTTCCTCCTTCACCGGGAGACTTCCAACCACCTGACATTCCAGACACTCCTGATTCT
TTGGGAGTGTTGTCCTTTGAATCTGAGTTGGTCAGAACCTGTGACAACCCTGCTGCGAGT
CCTCCACAACATTCTGTGTCACTGACAAACAACCTCATTAGTAGGCGGGCTCCCACCGAC
CTTCAAATCTGAATGGCTGTTGGCTTTTAGACAGTCTACATATTACATTATTACAGAAGT
AGCCTAGTGACCGTGAAGCAGACAGAACAGATAAGGGCAGCTAGGAAGACCAGATGTTTA
GCCAGACAACTGCAAACCCATTTAAAAAAGGGAAAATGGCTCTAATTCTGAACTGGGAAA
GGAATAGTTTCAAGTGCAAACACAGTTACCAAATTGGGATTACTTTTTCACGGGCTCTCT
TCAAAATATGTGATAACTAATTTTGGGAAAAATCACATGTTCAGAATCGAAGCTAAATGG
AACCAGGTTTTTCCTTGAAGGGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.506108

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.506108

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030772, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030772, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-803, gnl|bosTau2|chr3 (73377437-73376641)
               

               
               1-803, gnl|Hg17|chr1 (39009804-39009002)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-803, gnl|bosTau2|chr3 (73377437-73376641)
               

               
               1-803, gnl|Hg17|chr1 (39009804-39009002)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.29274)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               tes (0.207814)

	1-803, gnl\|bosTau2\|chr3 (73377437-73376641)
	1-803, gnl\|Hg17\|chr1 (39009804-39009002)