Ss1.1-rtes37_a3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAGGGGGCGGTTAGGAGAATTGGACGCGCACCCTCCATGGCTGCGGCTTGTGTCGCGCT CTGGGTAGTCTGTGTGCTGCGAGTGACGCTGGCCACTATCTACTTCCAGGAGGAATTTCT AGATGGAGAGCGCTGGAGGAACCGATGGGTGCAGTCCAGCAATGACTCCCAATTTGGGCA TTTTAGACTATCGTCCGGGAAATTTTATGGTCATAAAGAGAAAGACAAAGGTCTGCAAAC CACTCAAAACAGCCGCTTCTATGCCATCTCTGCACGGTTCAAACCATTTAGCAACAAAGG GAAAAATCTGATCATTCAGTACACAGTGAAACATGAGCAGAAGATGGACTGTGGAGGGGG CTACATTAAAATCTTCCCTGCAGACGTGGATCAGAAAAACCTGAATGGAAAATCCCAGTA CTATATTATGTTTGGACCCGATATTTGTGGATTTGATATCAAGAAAGTTCATGTTATTTT ATATTTCAAGAATCAGTATCACTCAAACAAAAAATCAATCAGGTGTAAGGTTGATGGTTT TACCCACCTCTACACTCTGATTCTAAGACCAGACCTCACTTACGAAGTGAAAATTGATGG TCAGTCAATTGAATCCGGCAGCATAGAGTATGACTGGCAATTAACATCACTGAAAAAGAT GGAGATGGCTTCGGCAGAGTCTAAGGACTGGGACCAGGCTACAGAGAAACCCCAGGACTG GGAGAAGCATTTTCTGGATGCTGGTGCCAGCAAGCCGAGCGACTGGAACAGCGAACTGGA TGGGGACTGGCAGGCGCCTATGCTGCAGAAACCTCCATACCAGGATGGCCTGAAACCAGA AGGTATAGACAAAGATATTTGGCTCCATCAGAAGATGAAACACACCAACTATTTGACGGA ATATGATCTCTCAGAATTTGAGAATATTGGTGCCATCGGACTGGAGCTTTGGCAGGTGAG ATCCGGAACCATTTTCGATAACTTCCTGATCACAGATGATGAAGAGTATGCCGAGAACTT CGGCAAGGCCACCTGGGGTGAAACCAAGGACCCAGAAAGGGAGATGGATGCCATACAGGC CAAGGAAGAAGTGAAGAAGGCCCGAGAGGAAGATGAGGAGGATTTTCAGATGGGCAGGTT TAATGGGCAAGAAAATAACTTCAGAAGATTCTACAGGAGGAATGAACTTTAGTCATCCCC ACCCCAGATAAAGATGACTGGTAAAACCTGATTTCTACTTTAATCTACACTTAAAAGCTC AAATGTCTACATCCATGGTCATATGTCCAATTTTCTTTGAAAAATATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAGGGGGCGGTTAGGAGAATTGGACGCGCACCCTCCATGGCTGCGGCTTGTGTCGCGCT CTGGGTAGTCTGTGTGCTGCGAGTGACGCTGGCCACTATCTACTTCCAGGAGGAATTTCT AGATGGAGAGCGCTGGAGGAACCGATGGGTGCAGTCCAGCAATGACTCCCAATTTGGGCA TTTTAGACTATCGTCCGGGAAATTTTATGGTCATAAAGAGAAAGACAAAGGTCTGCAAAC CACTCAAAACAGCCGCTTCTATGCCATCTCTGCACGGTTCAAACCATTTAGCAACAAAGG GAAAAATCTGATCATTCAGTACACAGTGAAACATGAGCAGAAGATGGACTGTGGAGGGGG CTACATTAAAATCTTCCCTGCAGACGTGGATCAGAAAAACCTGAATGGAAAATCCCAGTA CTATATTATGTTTGGACCCGATATTTGTGGATTTGATATCAAGAAAGTTCATGTTATTTT ATATTTCAAGAATCAGTATCACTCAAACAAAAAATCAATCAGGTGTAAGGTTGATGGTTT TACCCACCTCTACACTCTGATTCTAAGACCAGACCTCACTTACGAAGTGAAAATTGATGG TCAGTCAATTGAATCCGGCAGCATAGAGTATGACTGGCAATTAACATCACTGAAAAAGAT GGAGATGGCTTCGGCAGAGTCTAAGGACTGGGACCAGGCTACAGAGAAACCCCAGGACTG GGAGAAGCATTTTCTGGATGCTGGTGCCAGCAAGCCGAGCGACTGGAACAGCGAACTGGA TGGGGACTGGCAGGCGCCTATGCTGCAGAAACCTCCATACCAGGATGGCCTGAAACCAGA AGGTATAGACAAAGATATTTGGCTCCATCAGAAGATGAAACACACCAACTATTTGACGGA ATATGATCTCTCAGAATTTGAGAATATTGGTGCCATCGGACTGGAGCTTTGGCAGGTGAG ATCCGGAACCATTTTCGATAACTTCCTGATCACAGATGATGAAGAGTATGCCGAGAACTT CGGCAAGGCCACCTGGGGTGAAACCAAGGACCCAGAAAGGGAGATGGATGCCATACAGGC CAAGGAAGAAGTGAAGAAGGCCCGAGAGGAAGATGAGGAGGATTTTCAGATGGGCAGGTT TAATGGGCAAGAAAATAACTTCAGAAGATTCTACAGGAGGAATGAACTTTAGTCATCCCC ACCCCAGATAAAGATGACTGGTAAAACCTGATTTCTACTTTAATCTACACTTAAAAGCTC AAATGTCTACATCCATGGTCATATGTCCAATTTTCTTTGAAAAATATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 14-128, gnl|bosTau2|chr7 (5728888-5728774) | |
| 14-128, gnl|Hg17|chr19 (16467964-16467850) | |
| 14-128, gnl|Mm7|chr8 (70966602-70966488) | |
| 227-435, gnl|bosTau2|chr7 (5722843-5722635) | |
| 227-435, gnl|canFam2|chr20 (49044947-49044735) | |
| 227-435, gnl|danRer3|chrNA (33964914-33965126) | |
| 227-435, gnl|dasNov1|scaffold_57872 (40249-40037) | |
| 227-435, gnl|echTel1|scaffold_306490 (9842-9630) | |
| 227-435, gnl|fr1|chrUn (18655415-18655203) | |
| 227-435, gnl|galGal2|chr28 (3627344-3627132) | |
| 227-435, gnl|hg17|chr19 (16462172-16462384) | |
| 227-435, gnl|Hg17|chr19 (16462385-16462177) | |
| 227-435, gnl|loxAfr1|scaffold_103460 (8459-8671) | |
| 227-435, gnl|mm7|chr8 (70961321-70961533) | |
| 227-435, gnl|Mm7|chr8 (70961534-70961326) | |
| 227-435, gnl|monDom2|scaffold_100 (3047097-3047309) | |
| 227-435, gnl|oryCun1|scaffold_181572 (4510-4298) | |
| 227-435, gnl|panTro1|chr20 (17148056-17148268) | |
| 227-435, gnl|rheMac2|chr19 (12611573-12611363) | |
| 227-435, gnl|rn3|chr16 (17820867-17820655) | |
| 227-435, gnl|tetNig1|chr1 (11030038-11030250) | |
| 227-435, gnl|xenTro1|scaffold_468 (401079-400867) | |
| 528-721, gnl|bosTau2|chr7 (5711258-5711062) | |
| 528-721, gnl|Hg17|chr19 (16455928-16455735) | |
| 528-721, gnl|Mm7|chr8 (70954458-70954266) | |
| 821-957, gnl|bosTau2|chr7 (5709802-5709669) | |
| 821-957, gnl|canFam2|chr20 (49058688-49058579) | |
| 821-957, gnl|danRer3|chrNA (33959426-33959535) | |
| 821-957, gnl|dasNov1|scaffold_168102 (2595-2484) | |
| 821-957, gnl|echTel1|scaffold_304226 (3667-3555) | |
| 821-957, gnl|fr1|chrUn (18656316-18656192) | |
| 821-957, gnl|galGal2|chr28 (3628714-3628602) | |
| 821-957, gnl|hg17|chr19 (16454258-16454370) | |
| 821-957, gnl|Hg17|chr19 (16454395-16454259) | |
| 821-957, gnl|loxAfr1|scaffold_8232 (72827-72715) | |
| 821-957, gnl|mm7|chr8 (70950054-70950166) | |
| 821-957, gnl|Mm7|chr8 (70950191-70950055) | |
| 821-957, gnl|monDom2|scaffold_100 (3037879-3037991) | |
| 821-957, gnl|oryCun1|scaffold_181572 (11484-11372) | |
| 821-957, gnl|panTro1|chr20 (17140127-17140239) | |
| 821-957, gnl|rheMac2|chr19 (12612825-12612713) | |
| 821-957, gnl|rn3|chr16 (17840291-17840179) | |
| 821-957, gnl|tetNig1|chr1 (11029138-11029260) | |
| 821-957, gnl|xenTro1|scaffold_468 (402773-402661) | |
| 1044-1294, gnl|bosTau2|chr7 (5704501-5704246) | |
| 1044-1294, gnl|Hg17|chr19 (16451090-16450824) | |
| 1044-1294, gnl|Mm7|chr8 (70947655-70947400) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-128, gnl|bosTau2|chr7 (5728888-5728774) | |
| 14-128, gnl|Hg17|chr19 (16467964-16467850) | |
| 14-128, gnl|Mm7|chr8 (70966602-70966488) | |
| 227-435, gnl|bosTau2|chr7 (5722843-5722635) | |
| 227-435, gnl|canFam2|chr20 (49044947-49044735) | |
| 227-435, gnl|danRer3|chrNA (33964914-33965126) | |
| 227-435, gnl|dasNov1|scaffold_57872 (40249-40037) | |
| 227-435, gnl|echTel1|scaffold_306490 (9842-9630) | |
| 227-435, gnl|fr1|chrUn (18655415-18655203) | |
| 227-435, gnl|galGal2|chr28 (3627344-3627132) | |
| 227-435, gnl|hg17|chr19 (16462172-16462384) | |
| 227-435, gnl|Hg17|chr19 (16462385-16462177) | |
| 227-435, gnl|loxAfr1|scaffold_103460 (8459-8671) | |
| 227-435, gnl|mm7|chr8 (70961321-70961533) | |
| 227-435, gnl|Mm7|chr8 (70961534-70961326) | |
| 227-435, gnl|monDom2|scaffold_100 (3047097-3047309) | |
| 227-435, gnl|oryCun1|scaffold_181572 (4510-4298) | |
| 227-435, gnl|panTro1|chr20 (17148056-17148268) | |
| 227-435, gnl|rheMac2|chr19 (12611573-12611363) | |
| 227-435, gnl|rn3|chr16 (17820867-17820655) | |
| 227-435, gnl|tetNig1|chr1 (11030038-11030250) | |
| 227-435, gnl|xenTro1|scaffold_468 (401079-400867) | |
| 528-721, gnl|bosTau2|chr7 (5711258-5711062) | |
| 528-721, gnl|Hg17|chr19 (16455928-16455735) | |
| 528-721, gnl|Mm7|chr8 (70954458-70954266) | |
| 821-957, gnl|bosTau2|chr7 (5709802-5709669) | |
| 821-957, gnl|canFam2|chr20 (49058688-49058579) | |
| 821-957, gnl|danRer3|chrNA (33959426-33959535) | |
| 821-957, gnl|dasNov1|scaffold_168102 (2595-2484) | |
| 821-957, gnl|echTel1|scaffold_304226 (3667-3555) | |
| 821-957, gnl|fr1|chrUn (18656316-18656192) | |
| 821-957, gnl|galGal2|chr28 (3628714-3628602) | |
| 821-957, gnl|hg17|chr19 (16454258-16454370) | |
| 821-957, gnl|Hg17|chr19 (16454395-16454259) | |
| 821-957, gnl|loxAfr1|scaffold_8232 (72827-72715) | |
| 821-957, gnl|mm7|chr8 (70950054-70950166) | |
| 821-957, gnl|Mm7|chr8 (70950191-70950055) | |
| 821-957, gnl|monDom2|scaffold_100 (3037879-3037991) | |
| 821-957, gnl|oryCun1|scaffold_181572 (11484-11372) | |
| 821-957, gnl|panTro1|chr20 (17140127-17140239) | |
| 821-957, gnl|rheMac2|chr19 (12612825-12612713) | |
| 821-957, gnl|rn3|chr16 (17840291-17840179) | |
| 821-957, gnl|tetNig1|chr1 (11029138-11029260) | |
| 821-957, gnl|xenTro1|scaffold_468 (402773-402661) | |
| 1044-1294, gnl|bosTau2|chr7 (5704501-5704246) | |
| 1044-1294, gnl|Hg17|chr19 (16451090-16450824) | |
| 1044-1294, gnl|Mm7|chr8 (70947655-70947400) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cte (1.75644) | |
| tes (1.24688) | |
| fco (0.157208) | |
| thg (0.126791) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.75644) | |
| tes (1.24688) | |
| fco (0.157208) | |
| thg (0.126791) |