Non-Coding RNA Search

Ss1.1-rtes37_b18.5

Sequence:


               
               ACATGTGTTGTTTCCCTGCCTGCAACCCTCTTCCTCCTCTAGCCATGATCACATTCTCTC
TGTATAAATGCCCAGTTGACAGCTGAACACTGTCAACTTCCCCGCTAGATTTTAAACTCC
ACAAGATCAGGAACCTGTGTTTTCTGTTCACTCCTGGACTCCCCAGTAACTTGACGCAGG
GCCTGGCCAGTGGGGGTTTGGAGAGCTATTTGTTGAATAGGTGGACAGAACGGATAAGAG
CAACCCAGTAAAGGCTCCAGGGTGTCAGTGGGTTCCCTGTAGGGCACTTGCCTCCAATGA
CTGTAACTTGATTCTCTTTGCACATAGAAATAATATTTTGCTGTTTTTCTTAATCATTGA
GCCTTCTGGCTATGTTAGAAGCAATCTTTTAGGGAACTTAGAATTGACTGTTACACCTCA
GTCTGAGGGAAAAATCACGTTGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTAAGC
CTGCAAAGGATTAGACCAAATACATTCCACCCCACCTCAAATGGAAATATGCTACTTTAA
AAAAACCCTTTCACTATCTCCTCTCCATCTCTAATTTTCACTGGAATATGTAAAGTCCTA
TAGATTCTTAGAGGAAGAAAAATCAAAGTGTTACTACTAGGAGTTCCTGGTGTGGCACAG
TGGGTTAAGGATCTGGTGTTGTCT------------------------------------
------------CAGGTGTGGCCAGGGGAAAAAAGCAATTACTAAGTATTTGATTATGTG
GGATTCTGGAACCTGTGTATTAACTGCCATCATCATCAAATCAGTAAACACTGCTTGATG
GTGATAAAAATGGTGGCCTCCTCACTCACAATGATATTTTCTCATTTCCTAGTGGGATTT
TAGTGTGTACTGACGTGATGGCCCGAGGAATAGATATTCCAGAAGTGAACTGGGTTTTGC
AGTACGACCCTCCCAGCAGTGCAAGGTACAGCATGATAGAATGTTACCTGCTCTGCCAGG
AATCTAGCCTAACAAAATAGGAATCCTGAGGAAAATAAACGTTATTTGAAATAGCAAAAA
AGTAGGTGAACTGGTGAGTAATCATTGATGTGTCTATAGTGATCCTGTAGTATGCAGAAA
TTAGCTATTTTCAAATACTTTTTAAAGTTCTTGCAGAAATGCATGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGTGTTGTTTCCCTGCCTGCAACCCTCTTCCTCCTCTAGCCATGATCACATTCTCTC
TGTATAAATGCCCAGTTGACAGCTGAACACTGTCAACTTCCCCGCTAGATTTTAAACTCC
ACAAGATCAGGAACCTGTGTTTTCTGTTCACTCCTGGACTCCCCAGTAACTTGACGCAGG
GCCTGGCCAGTGGGGGTTTGGAGAGCTATTTGTTGAATAGGTGGACAGAACGGATAAGAG
CAACCCAGTAAAGGCTCCAGGGTGTCAGTGGGTTCCCTGTAGGGCACTTGCCTCCAATGA
CTGTAACTTGATTCTCTTTGCACATAGAAATAATATTTTGCTGTTTTTCTTAATCATTGA
GCCTTCTGGCTATGTTAGAAGCAATCTTTTAGGGAACTTAGAATTGACTGTTACACCTCA
GTCTGAGGGAAAAATCACGTTGTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTTAAGC
CTGCAAAGGATTAGACCAAATACATTCCACCCCACCTCAAATGGAAATATGCTACTTTAA
AAAAACCCTTTCACTATCTCCTCTCCATCTCTAATTTTCACTGGAATATGTAAAGTCCTA
TAGATTCTTAGAGGAAGAAAAATCAAAGTGTTACTACTAGGAGTTCCTGGTGTGGCACAG
TGGGTTAAGGATCTGGTGTTGTCT------------------------------------
------------CAGGTGTGGCCAGGGGAAAAAAGCAATTACTAAGTATTTGATTATGTG
GGATTCTGGAACCTGTGTATTAACTGCCATCATCATCAAATCAGTAAACACTGCTTGATG
GTGATAAAAATGGTGGCCTCCTCACTCACAATGATATTTTCTCATTTCCTAGTGGGATTT
TAGTGTGTACTGACGTGATGGCCCGAGGAATAGATATTCCAGAAGTGAACTGGGTTTTGC
AGTACGACCCTCCCAGCAGTGCAAGGTACAGCATGATAGAATGTTACCTGCTCTGCCAGG
AATCTAGCCTAACAAAATAGGAATCCTGAGGAAAATAAACGTTATTTGAAATAGCAAAAA
AGTAGGTGAACTGGTGAGTAATCATTGATGTGTCTATAGTGATCCTGTAGTATGCAGAAA
TTAGCTATTTTCAAATACTTTTTAAAGTTCTTGCAGAAATGCATGTGA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               232-451, gnl|bosTau2|chr17 (26585706-26585921)
               

               
               232-451, gnl|Hg17|chr12 (122625051-122625653)
               


               
               702-1140, gnl|bosTau2|chr17 (26586105-26586532)
               

               
               702-1140, gnl|Hg17|chr12 (122625802-122626705)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               232-451, gnl|bosTau2|chr17 (26585706-26585921)
               

               
               232-451, gnl|Hg17|chr12 (122625051-122625653)
               


               
               702-1140, gnl|bosTau2|chr17 (26586105-26586532)
               

               
               702-1140, gnl|Hg17|chr12 (122625802-122626705)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	232-451, gnl\|bosTau2\|chr17 (26585706-26585921)
	232-451, gnl\|Hg17\|chr12 (122625051-122625653)

	702-1140, gnl\|bosTau2\|chr17 (26586105-26586532)
	702-1140, gnl\|Hg17\|chr12 (122625802-122626705)