Non-Coding RNA Search

Ss1.1-rtes37_c3.5

Sequence:


               
               CTGTGATCCATCATCCCATCCACCATGAGTGTGGGGCAGATGACCTAAACGAAGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAGAAAGCAAGCCTCCCATCCCAACCCAGGTGGGGC
CCACCACCACAGCCACCGACACAGGTATGGTCATGGTCACGGGTACCCCGGACTCAGCAG
CTCCCATCACCATCTGGCGCTCTGAAAGCCCCACAGGCAAGTCCCAGGGCAACAAGGTGA
TCAAGAAGGTCAAGAAGAAAAAGGAAAAAGAGAAAGACAAGGAGGAGGAGACGGATGAAA
AAGCAAAGCTGAAGAAAAAAGTCAAGAAAGGCAAGTTGACTAAGAAGAAAAGCCCCGTTA
AATCGGAATCACCTCCAAACTTGAGCCGATCATTAAGCCCAAGAGAGTCGGCCAGGATGT
CAGAGTCCAGCCCGGACAGCCGGCAAGACCTGGAGAGTGAGGACAGTTACAAGGACCCTG
GGCGGGAGGAACCCTCCAGTGAGGATACTGTGGAGTCTTCATCGCCCAGGAAGAGAGAGA
AGAACATAGTCCAGGCTAAGAAGCTGGGGACGAAGACCTCGCCGGTCAAGAAGGTCAACA
AGAGGAAATCTCCCCCAGCATCCAACCCCAATCTCAAGTTGGGCCAGGGAGACGAGGGTG
AAGAATAAATGCGATCAACCCTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGATCCATCATCCCATCCACCATGAGTGTGGGGCAGATGACCTAAACGAAGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAGAAAGCAAGCCTCCCATCCCAACCCAGGTGGGGC
CCACCACCACAGCCACCGACACAGGTATGGTCATGGTCACGGGTACCCCGGACTCAGCAG
CTCCCATCACCATCTGGCGCTCTGAAAGCCCCACAGGCAAGTCCCAGGGCAACAAGGTGA
TCAAGAAGGTCAAGAAGAAAAAGGAAAAAGAGAAAGACAAGGAGGAGGAGACGGATGAAA
AAGCAAAGCTGAAGAAAAAAGTCAAGAAAGGCAAGTTGACTAAGAAGAAAAGCCCCGTTA
AATCGGAATCACCTCCAAACTTGAGCCGATCATTAAGCCCAAGAGAGTCGGCCAGGATGT
CAGAGTCCAGCCCGGACAGCCGGCAAGACCTGGAGAGTGAGGACAGTTACAAGGACCCTG
GGCGGGAGGAACCCTCCAGTGAGGATACTGTGGAGTCTTCATCGCCCAGGAAGAGAGAGA
AGAACATAGTCCAGGCTAAGAAGCTGGGGACGAAGACCTCGCCGGTCAAGAAGGTCAACA
AGAGGAAATCTCCCCCAGCATCCAACCCCAATCTCAAGTTGGGCCAGGGAGACGAGGGTG
AAGAATAAATGCGATCAACCCTTAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               122-235, - strand, RNAz p=0.552499
               

               
               393-668, - strand, RNAz p=0.91842

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-235, - strand, RNAz p=0.552499
               

               
               393-668, - strand, RNAz p=0.91842

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-682, gnl|bosTau2|chr19 (13673037-13672367)
               

               
               3-682, gnl|Hg17|chr17 (24055326-24054662)
               

               
               3-682, gnl|Mm7|chr11 (78286446-78287072)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-682, gnl|bosTau2|chr19 (13673037-13672367)
               

               
               3-682, gnl|Hg17|chr17 (24055326-24054662)
               

               
               3-682, gnl|Mm7|chr11 (78286446-78287072)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.415628)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cst (0.140036)

	122-235, - strand, RNAz p=0.552499
	393-668, - strand, RNAz p=0.91842

	3-682, gnl\|bosTau2\|chr19 (13673037-13672367)
	3-682, gnl\|Hg17\|chr17 (24055326-24054662)
	3-682, gnl\|Mm7\|chr11 (78286446-78287072)