Non-Coding RNA Search

Ss1.1-rtes37_f2.5

Sequence:


               
               AGAGGACCAGCACAGTAGTATGTGGAAGAGAATCGACCACCAGCTCAAGATCAAAGCAGG
GGATGGGCCTCAGGCAGGACAGTTCAAGGAGCTGGGTCCAGCTCGGGAACCCACTGTGCC
ACACCGTCTAGGGCTGTCAGAATTCCAGAGCTTCCCTGTGTTCGAGGACATCAGCCATCA
CATCAAAGAAATGGGGGCCCAACTGGTAAAGAAAGTCAATGCCGTCTTTCAGCTGGACAT
CACAAAGGATGGGAAGACCATCCTGCAGTGGACCATTGATCTGAAGAATGGCTCTGGGGA
CACATATCCAGGACCAGCCAGGCTCCCAGCAGACACTGTCTTCACAATCCCAGAGCCTGT
CTTTATGGAGTTGGTTTTGGGCAAAATGAACCCTCAGAAAGCCTTCCTTGCCGGCAAGTT
CAAAGTGAGCGGCAAAGTTCTGCTTGGCCAGAAACTGGAGAGAGTTTTCAAAGACTGGGC
TAAATAATAAGCCTGCAATAATACCAGGGAAATGATCAGAACTTCTCTCCAATTATAATG
TTGAGCGGAAATCACGCTTAAACTGAAGATTAAAACCAAAAGTATTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGACCAGCACAGTAGTATGTGGAAGAGAATCGACCACCAGCTCAAGATCAAAGCAGG
GGATGGGCCTCAGGCAGGACAGTTCAAGGAGCTGGGTCCAGCTCGGGAACCCACTGTGCC
ACACCGTCTAGGGCTGTCAGAATTCCAGAGCTTCCCTGTGTTCGAGGACATCAGCCATCA
CATCAAAGAAATGGGGGCCCAACTGGTAAAGAAAGTCAATGCCGTCTTTCAGCTGGACAT
CACAAAGGATGGGAAGACCATCCTGCAGTGGACCATTGATCTGAAGAATGGCTCTGGGGA
CACATATCCAGGACCAGCCAGGCTCCCAGCAGACACTGTCTTCACAATCCCAGAGCCTGT
CTTTATGGAGTTGGTTTTGGGCAAAATGAACCCTCAGAAAGCCTTCCTTGCCGGCAAGTT
CAAAGTGAGCGGCAAAGTTCTGCTTGGCCAGAAACTGGAGAGAGTTTTCAAAGACTGGGC
TAAATAATAAGCCTGCAATAATACCAGGGAAATGATCAGAACTTCTCTCCAATTATAATG
TTGAGCGGAAATCACGCTTAAACTGAAGATTAAAACCAAAAGTATTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57104366|ref|XP_542873.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57104366|ref|XP_542873.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               201-520, + strand, RNAz p=0.749759

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-520, + strand, RNAz p=0.749759

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-587, gnl|bosTau2|chr8 (34831476-34830891)
               

               
               2-587, gnl|Hg17|chr20 (18742442-18743020)
               

               
               2-587, gnl|Mm7|chr2 (144564585-144565166)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-587, gnl|bosTau2|chr8 (34831476-34830891)
               

               
               2-587, gnl|Hg17|chr20 (18742442-18743020)
               

               
               2-587, gnl|Mm7|chr2 (144564585-144565166)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (1.4547)
               

               
               cte (0.58548)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.4547)
               

               
               cte (0.58548)

	2-587, gnl\|bosTau2\|chr8 (34831476-34830891)
	2-587, gnl\|Hg17\|chr20 (18742442-18743020)
	2-587, gnl\|Mm7\|chr2 (144564585-144565166)