Non-Coding RNA Search

Ss1.1-rtes38_c5.5

Sequence:


               
               TTGGCCTACTGGTACTGGACAGATATAAAGGAATGAAACTGTACACATAAAACTGTCCCC
TTTGAGCAAACGTAAAATCTCTCCACCTCAGTCTTGTAAAATACACACACGTTGTAAGAA
ACATGTGTACTTCCAAGCTCTGTTATGACGTTTTATAACGTCAGTACTTAAGTATATAGA
ACAATGCGTGGTGCATAATAAGTGCTCTTCAACTATTATTACTTTCCCTTTCACTCTCTC
CCCAAAAATAGACACTATAAGGAATTTAGTGTGCATATCTTCCATTATTTATAGTTGTAA
CTAGGAAAATTATTCTTTTATATATGTTTAAATTTTTTTGTTTGCTTTTGTTTTAATATG
ATTAATTAGGAATTTATATAGTTTAATTTTTTCTTTTTGTCTTCTAGTTTTATTGAGATA
CAGGTACTTTCACACTGTACTGATTGTACATTTTTTTAATCTATGTTTGAGACTCTATCC
AAGTGTGAAAGTAGGCAGGCAGAGAAAAAAAGAAAGAGGTGATAGATTTAAGAAAGTAGC
TATAGCAAATTCCTTTTTATATGCATTATAATATTCTACCATAAGTGTGTACATTTTTAT
TCATTTATCAATTTCTCTGTTAATAGACACTTAGCATATTTTAAAGTTTTCGCTATTACA
CATGATCTTGGAATCATGATGAATAATCTTGGGAATTTTTGTAATTGTCACATTAGTAAT
TTACGTAGAGAGTAACAGTTGTGAGAATTTTACTGCATTTAGCAAGAGAATCAGCTGAGA
AAAATAAACATCATTTAAACAGCTAATGTTTCATGCTTTGAACATTCTTGGTGTCTTTAC
TGAGATGTGCATTTCTCTAACCAAAAATTTAACTAGCTAATTTTCACCTAGTAGGCACTT
GCTAAGTGTCTACTTGAAGTAAGTAAACTGAACATAAAATATGTCAGTAATCTCAATAAT
GAATGAGACAGCCATCAACATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGCCTACTGGTACTGGACAGATATAAAGGAATGAAACTGTACACATAAAACTGTCCCC
TTTGAGCAAACGTAAAATCTCTCCACCTCAGTCTTGTAAAATACACACACGTTGTAAGAA
ACATGTGTACTTCCAAGCTCTGTTATGACGTTTTATAACGTCAGTACTTAAGTATATAGA
ACAATGCGTGGTGCATAATAAGTGCTCTTCAACTATTATTACTTTCCCTTTCACTCTCTC
CCCAAAAATAGACACTATAAGGAATTTAGTGTGCATATCTTCCATTATTTATAGTTGTAA
CTAGGAAAATTATTCTTTTATATATGTTTAAATTTTTTTGTTTGCTTTTGTTTTAATATG
ATTAATTAGGAATTTATATAGTTTAATTTTTTCTTTTTGTCTTCTAGTTTTATTGAGATA
CAGGTACTTTCACACTGTACTGATTGTACATTTTTTTAATCTATGTTTGAGACTCTATCC
AAGTGTGAAAGTAGGCAGGCAGAGAAAAAAAGAAAGAGGTGATAGATTTAAGAAAGTAGC
TATAGCAAATTCCTTTTTATATGCATTATAATATTCTACCATAAGTGTGTACATTTTTAT
TCATTTATCAATTTCTCTGTTAATAGACACTTAGCATATTTTAAAGTTTTCGCTATTACA
CATGATCTTGGAATCATGATGAATAATCTTGGGAATTTTTGTAATTGTCACATTAGTAAT
TTACGTAGAGAGTAACAGTTGTGAGAATTTTACTGCATTTAGCAAGAGAATCAGCTGAGA
AAAATAAACATCATTTAAACAGCTAATGTTTCATGCTTTGAACATTCTTGGTGTCTTTAC
TGAGATGTGCATTTCTCTAACCAAAAATTTAACTAGCTAATTTTCACCTAGTAGGCACTT
GCTAAGTGTCTACTTGAAGTAAGTAAACTGAACATAAAATATGTCAGTAATCTCAATAAT
GAATGAGACAGCCATCAACATGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               868-984, - strand, RNAz p=0.99902

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               868-984, - strand, RNAz p=0.99902

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               316-984, gnl|bosTau2|chr13 (61767367-61766717)
               

               
               316-984, gnl|Hg17|chr20 (51039759-51040371)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               316-984, gnl|bosTau2|chr13 (61767367-61766717)
               

               
               316-984, gnl|Hg17|chr20 (51039759-51040371)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	316-984, gnl\|bosTau2\|chr13 (61767367-61766717)
	316-984, gnl\|Hg17\|chr20 (51039759-51040371)