Ss1.1-rtes38_h24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCGAGCGTAGCTGGGCCGCCGCCGCTGCCGCTTCCTGCGGGAGCCCGTCTGAACGCC GACACTCTTCTCCGCGCGAGCGAGCCGCCGACCGCCCAGCAAAATGGGAAATGAGGCGAG TTATCCTTTGGAAATGTGCTCACACTTTGATGCTGATGAAATTAAAAGGCTAGGAAAGAG ATTTAAGAAGCTCGATTTGGACAATTCTGGCTCTTTGAGTGTGGAAGAGTTCATGTCTCT GCCTGAGTTACAACAAAATCCCTTAGTACAGCGAGTAATAGATATATTCGACACAGATGG GAATGGAGAAGTAGACTTTAAAGAGTTCATTGAAGGAGTCTCTCAGTTCAGTGTCAAAGG AGATAAGGAACAGAAGTTGAGGTTTGCTTTCCGTATCTATGACATGGATAAGGATGGCTA TATTTCCAATGGGGAACTCTTCCAGGTGTTGAAGATGATGGTGGGGAACAATCTGAAAGA TACACAGTTACAGCAGATCGTAGACAAAACCATAATAAATGCAGATAAGGATGGAGATGG AAGAATATCTTTTGAAGAATTCTGTGCTGTTGTAGGCGGCTTAGATATCCACAAAAAGAT GGTGGTAGACGTGTGACTCTCCTTTAAAGAGCACCACCCAACACTTTTGCTTTCTTCTCC ATCTCTGAAGATCTGCTCAAGACGTCCAGCAATGCTCTCTGTGTATTTAAATGGAAGTAT TTTTCTCTGTGAAGCCACATTTTCCAACATGAGCCTCATGAAGCCAACTAAGTGTTATTG AACTCTTATTCTCTCAATAACTCAGTGTAGCACTTTAAAGTCTGAAGGACAGCAGCATGA AAAGAGCATATCAATGTGGTGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCGAGCGTAGCTGGGCCGCCGCCGCTGCCGCTTCCTGCGGGAGCCCGTCTGAACGCC GACACTCTTCTCCGCGCGAGCGAGCCGCCGACCGCCCAGCAAAATGGGAAATGAGGCGAG TTATCCTTTGGAAATGTGCTCACACTTTGATGCTGATGAAATTAAAAGGCTAGGAAAGAG ATTTAAGAAGCTCGATTTGGACAATTCTGGCTCTTTGAGTGTGGAAGAGTTCATGTCTCT GCCTGAGTTACAACAAAATCCCTTAGTACAGCGAGTAATAGATATATTCGACACAGATGG GAATGGAGAAGTAGACTTTAAAGAGTTCATTGAAGGAGTCTCTCAGTTCAGTGTCAAAGG AGATAAGGAACAGAAGTTGAGGTTTGCTTTCCGTATCTATGACATGGATAAGGATGGCTA TATTTCCAATGGGGAACTCTTCCAGGTGTTGAAGATGATGGTGGGGAACAATCTGAAAGA TACACAGTTACAGCAGATCGTAGACAAAACCATAATAAATGCAGATAAGGATGGAGATGG AAGAATATCTTTTGAAGAATTCTGTGCTGTTGTAGGCGGCTTAGATATCCACAAAAAGAT GGTGGTAGACGTGTGACTCTCCTTTAAAGAGCACCACCCAACACTTTTGCTTTCTTCTCC ATCTCTGAAGATCTGCTCAAGACGTCCAGCAATGCTCTCTGTGTATTTAAATGGAAGTAT TTTTCTCTGTGAAGCCACATTTTCCAACATGAGCCTCATGAAGCCAACTAAGTGTTATTG AACTCTTATTCTCTCAATAACTCAGTGTAGCACTTTAAAGTCTGAAGGACAGCAGCATGA AAAGAGCATATCAATGTGGTGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 608-727, - strand, RNAz p=0.687847 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 608-727, - strand, RNAz p=0.687847 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 147-323, gnl|bosTau2|chr11 (48135205-48135029) | |
| 147-323, gnl|canFam2|chr10 (70409568-70409774) | |
| 147-323, gnl|danRer3|chr14 (22491984-22491780) | |
| 147-323, gnl|dasNov1|scaffold_49611 (45072-45291) | |
| 147-323, gnl|echTel1|scaffold_288173 (40279-40076) | |
| 147-323, gnl|fr1|chrUn (99150522-99150732) | |
| 147-323, gnl|galGal2|chr3 (5938455-5938256) | |
| 147-323, gnl|hg17|chr2 (68327285-68327506) | |
| 147-323, gnl|Hg17|chr2 (68327473-68327297) | |
| 147-323, gnl|loxAfr1|scaffold_16893 (9625-9405) | |
| 147-323, gnl|mm7|chr11 (17145155-17144934) | |
| 147-323, gnl|Mm7|chr11 (17144966-17145142) | |
| 147-323, gnl|monDom2|scaffold_1 (34741174-34741388) | |
| 147-323, gnl|oryCun1|scaffold_206222 (88409-88613) | |
| 147-323, gnl|panTro1|chr12_random (25288810-25289031) | |
| 147-323, gnl|rheMac2|chr13 (68455905-68456126) | |
| 147-323, gnl|rn3|chr14 (98112478-98112258) | |
| 147-323, gnl|tetNig1|chrUn_random (105374842-105374657) | |
| 147-323, gnl|xenTro1|scaffold_112 (1191383-1191590) | |
| 569-864, gnl|bosTau2|chr11 (48127732-48127437) | |
| 569-864, gnl|Hg17|chr2 (68319793-68319499) | |
| 569-864, gnl|Mm7|chr11 (17150268-17150559) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 147-323, gnl|bosTau2|chr11 (48135205-48135029) | |
| 147-323, gnl|canFam2|chr10 (70409568-70409774) | |
| 147-323, gnl|danRer3|chr14 (22491984-22491780) | |
| 147-323, gnl|dasNov1|scaffold_49611 (45072-45291) | |
| 147-323, gnl|echTel1|scaffold_288173 (40279-40076) | |
| 147-323, gnl|fr1|chrUn (99150522-99150732) | |
| 147-323, gnl|galGal2|chr3 (5938455-5938256) | |
| 147-323, gnl|hg17|chr2 (68327285-68327506) | |
| 147-323, gnl|Hg17|chr2 (68327473-68327297) | |
| 147-323, gnl|loxAfr1|scaffold_16893 (9625-9405) | |
| 147-323, gnl|mm7|chr11 (17145155-17144934) | |
| 147-323, gnl|Mm7|chr11 (17144966-17145142) | |
| 147-323, gnl|monDom2|scaffold_1 (34741174-34741388) | |
| 147-323, gnl|oryCun1|scaffold_206222 (88409-88613) | |
| 147-323, gnl|panTro1|chr12_random (25288810-25289031) | |
| 147-323, gnl|rheMac2|chr13 (68455905-68456126) | |
| 147-323, gnl|rn3|chr14 (98112478-98112258) | |
| 147-323, gnl|tetNig1|chrUn_random (105374842-105374657) | |
| 147-323, gnl|xenTro1|scaffold_112 (1191383-1191590) | |
| 569-864, gnl|bosTau2|chr11 (48127732-48127437) | |
| 569-864, gnl|Hg17|chr2 (68319793-68319499) | |
| 569-864, gnl|Mm7|chr11 (17150268-17150559) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| tes (0.207814) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| kid (0.129735) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cbl (0.114797) | |
| cty (0.10408) |