Non-Coding RNA Search

Ss1.1-rtes38_p10.5

Sequence:


               
               AAAACACCATTTCAGCATATAATTAATCAGATTTCTAAATTACATGCCATAATTGACCCT
AATCATGAAATTGAATTTCCTGATATTCCAGAGAAGGATCTTCAAGATGTATTAAAGTGT
TGTTTAATAAGAGATCCTAAAAAGAGGATATCCATCCCTGAGCTTCTGGCACATCCATAT
GTTCAGATTCAAACTCATCCAGGTAACCAAATGGCTAAGGGAACCACTGAAGAAATGAAA
TATGTCCTGGGCCAACTTGTTGGCCTGAATTCTCCTAACTCGATTTTGAAAGCTGCTAAA
ACTTTGTATGAGCACTATAGTGGTGGTGAAAGTCACGATTCCTCTTCATCATCCGAGACT
TTGGGGAAAAAATGGGGGAAAAAATGATTTGCAGCTACTCATAAACTGTCAGGTATCACC
TGTAAAATATTTTGGACTGTTATACTCTTGATTCTCTGTGGAAATCTACTCAGCTTCACT
CTGAAATGTCACTGGCAGAAAAATTCAGTGGAACTGTAAAAATAACCACTAATGTCATGC
TGTGTATTAAATTGTAGATTGTTTTCTCTTTTACGCTCCTTTGTAAATCCAATGTAATTG
ATATCACTTCACACTTGGGATAGTGGGTGGAAAACCGAAATATATTCTCAAGAACTATGT
AAATAAGGCTTTGTATAGTATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACACCATTTCAGCATATAATTAATCAGATTTCTAAATTACATGCCATAATTGACCCT
AATCATGAAATTGAATTTCCTGATATTCCAGAGAAGGATCTTCAAGATGTATTAAAGTGT
TGTTTAATAAGAGATCCTAAAAAGAGGATATCCATCCCTGAGCTTCTGGCACATCCATAT
GTTCAGATTCAAACTCATCCAGGTAACCAAATGGCTAAGGGAACCACTGAAGAAATGAAA
TATGTCCTGGGCCAACTTGTTGGCCTGAATTCTCCTAACTCGATTTTGAAAGCTGCTAAA
ACTTTGTATGAGCACTATAGTGGTGGTGAAAGTCACGATTCCTCTTCATCATCCGAGACT
TTGGGGAAAAAATGGGGGAAAAAATGATTTGCAGCTACTCATAAACTGTCAGGTATCACC
TGTAAAATATTTTGGACTGTTATACTCTTGATTCTCTGTGGAAATCTACTCAGCTTCACT
CTGAAATGTCACTGGCAGAAAAATTCAGTGGAACTGTAAAAATAACCACTAATGTCATGC
TGTGTATTAAATTGTAGATTGTTTTCTCTTTTACGCTCCTTTGTAAATCCAATGTAATTG
ATATCACTTCACACTTGGGATAGTGGGTGGAAAACCGAAATATATTCTCAAGAACTATGT
AAATAAGGCTTTGTATAGTATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835043|ref|XP_608197.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835043|ref|XP_608197.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-129, gnl|bosTau2|chr9 (8457517-8457645)
               

               
               1-129, gnl|Hg17|chr6 (80806192-80806317)
               

               
               1-129, gnl|Mm7|chr9 (83966349-83966476)
               


               
               301-684, gnl|bosTau2|chr9 (8460436-8460828)
               

               
               301-684, gnl|Hg17|chr6 (80808555-80808948)
               

               
               301-684, gnl|Mm7|chr9 (83970231-83970612)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-129, gnl|bosTau2|chr9 (8457517-8457645)
               

               
               1-129, gnl|Hg17|chr6 (80806192-80806317)
               

               
               1-129, gnl|Mm7|chr9 (83966349-83966476)
               


               
               301-684, gnl|bosTau2|chr9 (8460436-8460828)
               

               
               301-684, gnl|Hg17|chr6 (80808555-80808948)
               

               
               301-684, gnl|Mm7|chr9 (83970231-83970612)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               thg (0.126791)

	1-129, gnl\|bosTau2\|chr9 (8457517-8457645)
	1-129, gnl\|Hg17\|chr6 (80806192-80806317)
	1-129, gnl\|Mm7\|chr9 (83966349-83966476)

	301-684, gnl\|bosTau2\|chr9 (8460436-8460828)
	301-684, gnl\|Hg17\|chr6 (80808555-80808948)
	301-684, gnl\|Mm7\|chr9 (83970231-83970612)