Non-Coding RNA Search

Ss1.1-rtes40_d15.5

Sequence:


               
               GAACAGTTCCCTGGATTATCTGGCCTACCCTGTAATCGTCTCTAATCATAGACAGACCAC
ATCATTCAGGAAGAAACTGGACTTTGGCCACTATGTATTCCATAAGAATAGAATACAAAT
AGTGAAGCCTACTGTTGATACCAAACCTCCAGTGGCGCACACACATCACATTTTAAAACT
GAGCAAACTACAGGGTGAACAAAAGAGAATCGACAAAATCGAATACGAAAACAAGCAACT
GTGTCAGAAAATCGCCGACGCCCACCGCGGCCCTGCCCAGGTGGATTGCTGGAACGAATA
TTTTTCCAAGAGCTTAAACAGAGAAACAAGGAACCGGGACCTAGTGAGAATCACCGTGGA
GAACCAGGGCATCCTGAAGAGGCTGGGTGATCGCAAACCCCACTACGACCGAAAGTCGTC
GGAGTTAGACTGGCAGAATTCAAGGCGCTATATCAGAAATACCACCAGATATCTTCTCTC
CCAAGGTGAATAGGGTTACTCACCATGGAAAAGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACAGTTCCCTGGATTATCTGGCCTACCCTGTAATCGTCTCTAATCATAGACAGACCAC
ATCATTCAGGAAGAAACTGGACTTTGGCCACTATGTATTCCATAAGAATAGAATACAAAT
AGTGAAGCCTACTGTTGATACCAAACCTCCAGTGGCGCACACACATCACATTTTAAAACT
GAGCAAACTACAGGGTGAACAAAAGAGAATCGACAAAATCGAATACGAAAACAAGCAACT
GTGTCAGAAAATCGCCGACGCCCACCGCGGCCCTGCCCAGGTGGATTGCTGGAACGAATA
TTTTTCCAAGAGCTTAAACAGAGAAACAAGGAACCGGGACCTAGTGAGAATCACCGTGGA
GAACCAGGGCATCCTGAAGAGGCTGGGTGATCGCAAACCCCACTACGACCGAAAGTCGTC
GGAGTTAGACTGGCAGAATTCAAGGCGCTATATCAGAAATACCACCAGATATCTTCTCTC
CCAAGGTGAATAGGGTTACTCACCATGGAAAAGATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27483000|ref|XP_208990.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27483000|ref|XP_208990.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-122, gnl|bosTau2|chr19 (38444241-38444120)
               

               
               1-122, gnl|Hg17|chr17 (39213359-39213480)
               

               
               1-122, gnl|Mm7|chr11 (102096155-102096276)
               


               
               191-312, gnl|bosTau2|chr19 (38443242-38443121)
               

               
               191-312, gnl|Hg17|chr17 (39214665-39214786)
               

               
               191-312, gnl|Mm7|chr11 (102097482-102097603)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-122, gnl|bosTau2|chr19 (38444241-38444120)
               

               
               1-122, gnl|Hg17|chr17 (39213359-39213480)
               

               
               1-122, gnl|Mm7|chr11 (102096155-102096276)
               


               
               191-312, gnl|bosTau2|chr19 (38443242-38443121)
               

               
               191-312, gnl|Hg17|chr17 (39214665-39214786)
               

               
               191-312, gnl|Mm7|chr11 (102097482-102097603)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (1.03907)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               cte (0.29274)

	1-122, gnl\|bosTau2\|chr19 (38444241-38444120)
	1-122, gnl\|Hg17\|chr17 (39213359-39213480)
	1-122, gnl\|Mm7\|chr11 (102096155-102096276)

	191-312, gnl\|bosTau2\|chr19 (38443242-38443121)
	191-312, gnl\|Hg17\|chr17 (39214665-39214786)
	191-312, gnl\|Mm7\|chr11 (102097482-102097603)