Non-Coding RNA Search

Ss1.1-rtes40_g13.5

Sequence:


               
               ATTTAAAAACGATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTACA
AGTACTTACTTCAGTTACCAGGTAAACAAGTAAGAACCAAACTTTCACAGGCATTTAATC
ATTGGCTAAAAGTTCCAGAAGACAAGCTACAGATTATCATTGAAGTGACGGAAATGTTAC
ATAATGCCAGTTTACTCATCGATGATATCGAAGACAACTCAAAACTCCGACGTGGCTTTC
CAGTGGCACACAGCATCTATGGAATTCCATCTGTCATCAATTCTGCCAATTATGTATATT
TTCTTGGCCTAGAGAAAGTCTTAACCCTTGATCACCCAGATGCAGTAAAGCTTTTTACCC
GTCAGCTTTTAGAACTACATCAGGGCCAAGGCCTAGATATCTATTGGAGGGATAATTACA
CTTGTCCCACTGAAGAGGAATATAAAGCTATGGTGCTGCAAAAGACAGGTGGACTGTTTG
GATTAGCAGTAGGCCTCATGCAGTTGTTCTCTGATTACAAAGAAGATTTAAAGCCACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTAAAAACGATGGAGAAGACTCAAGAAACAGTCCAAAGAATTCTTCTAGAACCCTACA
AGTACTTACTTCAGTTACCAGGTAAACAAGTAAGAACCAAACTTTCACAGGCATTTAATC
ATTGGCTAAAAGTTCCAGAAGACAAGCTACAGATTATCATTGAAGTGACGGAAATGTTAC
ATAATGCCAGTTTACTCATCGATGATATCGAAGACAACTCAAAACTCCGACGTGGCTTTC
CAGTGGCACACAGCATCTATGGAATTCCATCTGTCATCAATTCTGCCAATTATGTATATT
TTCTTGGCCTAGAGAAAGTCTTAACCCTTGATCACCCAGATGCAGTAAAGCTTTTTACCC
GTCAGCTTTTAGAACTACATCAGGGCCAAGGCCTAGATATCTATTGGAGGGATAATTACA
CTTGTCCCACTGAAGAGGAATATAAAGCTATGGTGCTGCAAAAGACAGGTGGACTGTTTG
GATTAGCAGTAGGCCTCATGCAGTTGTTCTCTGATTACAAAGAAGATTTAAAGCCACTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13905030|gb|AAH06798.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13905030|gb|AAH06798.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               310-540, - strand, RNAz p=0.631286

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-540, - strand, RNAz p=0.631286

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               151-540, gnl|bosTau2|chr28 (2150021-2149632)
               

               
               151-540, gnl|canFam2|chr4 (7590817-7590353)
               

               
               151-540, gnl|danRer3|chr15 (42507563-42507097)
               

               
               151-540, gnl|dasNov1|scaffold_146394 (4377-4841)
               

               
               151-540, gnl|echTel1|scaffold_282010 (40971-41436)
               

               
               151-540, gnl|fr1|chrUn (292506658-292507115)
               

               
               151-540, gnl|galGal2|chrUn (46924724-46925185)
               

               
               151-540, gnl|hg17|chr1 (231831348-231831809)
               

               
               151-540, gnl|Hg17|chr1 (231831365-231831754)
               

               
               151-540, gnl|loxAfr1|scaffold_15397 (14498-14033)
               

               
               151-540, gnl|mm7|chr13 (13420377-13419908)
               

               
               151-540, gnl|Mm7|chr13 (13420350-13419961)
               

               
               151-540, gnl|monDom2|scaffold_13 (50403390-50402917)
               

               
               151-540, gnl|oryCun1|scaffold_172622 (53387-53850)
               

               
               151-540, gnl|panTro1|chr1 (215654382-215654845)
               

               
               151-540, gnl|rheMac2|chr1 (221665983-221665520)
               

               
               151-540, gnl|rn3|chr17 (59479459-59479928)
               

               
               151-540, gnl|tetNig1|chr17 (1979618-1979173)
               

               
               151-540, gnl|xenTro1|scaffold_371 (882191-881730)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-540, gnl|bosTau2|chr28 (2150021-2149632)
               

               
               151-540, gnl|canFam2|chr4 (7590817-7590353)
               

               
               151-540, gnl|danRer3|chr15 (42507563-42507097)
               

               
               151-540, gnl|dasNov1|scaffold_146394 (4377-4841)
               

               
               151-540, gnl|echTel1|scaffold_282010 (40971-41436)
               

               
               151-540, gnl|fr1|chrUn (292506658-292507115)
               

               
               151-540, gnl|galGal2|chrUn (46924724-46925185)
               

               
               151-540, gnl|hg17|chr1 (231831348-231831809)
               

               
               151-540, gnl|Hg17|chr1 (231831365-231831754)
               

               
               151-540, gnl|loxAfr1|scaffold_15397 (14498-14033)
               

               
               151-540, gnl|mm7|chr13 (13420377-13419908)
               

               
               151-540, gnl|Mm7|chr13 (13420350-13419961)
               

               
               151-540, gnl|monDom2|scaffold_13 (50403390-50402917)
               

               
               151-540, gnl|oryCun1|scaffold_172622 (53387-53850)
               

               
               151-540, gnl|panTro1|chr1 (215654382-215654845)
               

               
               151-540, gnl|rheMac2|chr1 (221665983-221665520)
               

               
               151-540, gnl|rn3|chr17 (59479459-59479928)
               

               
               151-540, gnl|tetNig1|chr17 (1979618-1979173)
               

               
               151-540, gnl|xenTro1|scaffold_371 (882191-881730)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.415628)
               

               
               nco (0.161734)
               

               
               isp (0.150376)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               nco (0.161734)
               

               
               isp (0.150376)

	151-540, gnl\|bosTau2\|chr28 (2150021-2149632)
	151-540, gnl\|canFam2\|chr4 (7590817-7590353)
	151-540, gnl\|danRer3\|chr15 (42507563-42507097)
	151-540, gnl\|dasNov1\|scaffold_146394 (4377-4841)
	151-540, gnl\|echTel1\|scaffold_282010 (40971-41436)
	151-540, gnl\|fr1\|chrUn (292506658-292507115)
	151-540, gnl\|galGal2\|chrUn (46924724-46925185)
	151-540, gnl\|hg17\|chr1 (231831348-231831809)
	151-540, gnl\|Hg17\|chr1 (231831365-231831754)
	151-540, gnl\|loxAfr1\|scaffold_15397 (14498-14033)
	151-540, gnl\|mm7\|chr13 (13420377-13419908)
	151-540, gnl\|Mm7\|chr13 (13420350-13419961)
	151-540, gnl\|monDom2\|scaffold_13 (50403390-50402917)
	151-540, gnl\|oryCun1\|scaffold_172622 (53387-53850)
	151-540, gnl\|panTro1\|chr1 (215654382-215654845)
	151-540, gnl\|rheMac2\|chr1 (221665983-221665520)
	151-540, gnl\|rn3\|chr17 (59479459-59479928)
	151-540, gnl\|tetNig1\|chr17 (1979618-1979173)
	151-540, gnl\|xenTro1\|scaffold_371 (882191-881730)