Non-Coding RNA Search

Ss1.1-rtes40_j7.5

Sequence:


               
               AACGGAATTGCAAATGGGCAATGGGCTGGCATTGAGTTGGATGAACCAGAAGGAAAAAAC
AATGGAAGTGTTGGCAAAGTCCAGTACTTTAAATGCGCCCCCAAATACGGAATTTTTGCA
CCTCTTTCAAAGATTAGTAAAGCCAAAGATCGAAAGAAGAATATAGCACACACTCCCTCT
GCAAAAGCTGGACCTCTCGTCAGATCCCAGAAAATTGATGTGGCTCATGTGACATCGAAA
ATAAATACTGGATTAATGACTTCAAAAAAAGATAGTACTTCAGAATCAACACTTTCATTG
CCTCCTGGTGAAGAATTGAAAACTGGAACAGAGAAAGATGTTACCCTGCTGGGATCCGTC
AGCAGCTCCTCTTCTGCATCCTCCTTGGAGCCCAAACAGAGCCAGCCCACGAAACTGAGT
GCACGTGGCAATAACAAGAAGACAATGAGCAAAAGCCCTTCTGTCTCGTCTAGAGCCAGT
GCTGGTATCTATGGCTTTTTCAACCAGGCTTTCTTGGTGTTTTTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGGAATTGCAAATGGGCAATGGGCTGGCATTGAGTTGGATGAACCAGAAGGAAAAAAC
AATGGAAGTGTTGGCAAAGTCCAGTACTTTAAATGCGCCCCCAAATACGGAATTTTTGCA
CCTCTTTCAAAGATTAGTAAAGCCAAAGATCGAAAGAAGAATATAGCACACACTCCCTCT
GCAAAAGCTGGACCTCTCGTCAGATCCCAGAAAATTGATGTGGCTCATGTGACATCGAAA
ATAAATACTGGATTAATGACTTCAAAAAAAGATAGTACTTCAGAATCAACACTTTCATTG
CCTCCTGGTGAAGAATTGAAAACTGGAACAGAGAAAGATGTTACCCTGCTGGGATCCGTC
AGCAGCTCCTCTTCTGCATCCTCCTTGGAGCCCAAACAGAGCCAGCCCACGAAACTGAGT
GCACGTGGCAATAACAAGAAGACAATGAGCAAAAGCCCTTCTGTCTCGTCTAGAGCCAGT
GCTGGTATCTATGGCTTTTTCAACCAGGCTTTCTTGGTGTTTTTTATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|16552890|dbj|BAB71403.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|16552890|dbj|BAB71403.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               409-528, - strand, RNAz p=0.552641
               

               
               412-528, - strand, RNAz p=0.969724

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-528, - strand, RNAz p=0.552641
               

               
               412-528, - strand, RNAz p=0.969724

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               109-251, gnl|bosTau2|chr11 (50507905-50508047)
               

               
               109-251, gnl|Hg17|chr2 (29287201-29287346)
               

               
               109-251, gnl|Mm7|chr17 (70106063-70106205)
               


               
               340-528, gnl|bosTau2|chr11 (50543168-50543356)
               

               
               340-528, gnl|canFam2|chr17 (26084233-26084406)
               

               
               340-528, gnl|dasNov1|scaffold_124425 (6253-6425)
               

               
               340-528, gnl|echTel1|scaffold_322859 (5278-5444)
               

               
               340-528, gnl|galGal2|chr3 (8673572-8673737)
               

               
               340-528, gnl|hg17|chr2 (29291703-29291869)
               

               
               340-528, gnl|Hg17|chr2 (29291720-29291908)
               

               
               340-528, gnl|loxAfr1|scaffold_63106 (643-809)
               

               
               340-528, gnl|mm7|chr17 (70109862-70110029)
               

               
               340-528, gnl|Mm7|chr17 (70109880-70110068)
               

               
               340-528, gnl|monDom2|scaffold_1 (146383781-146383614)
               

               
               340-528, gnl|oryCun1|scaffold_215351 (91257-91085)
               

               
               340-528, gnl|panTro1|chr12 (30250639-30250805)
               

               
               340-528, gnl|rheMac2|chr13 (29152566-29152738)
               

               
               340-528, gnl|rn3|chr6 (23766794-23766625)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-251, gnl|bosTau2|chr11 (50507905-50508047)
               

               
               109-251, gnl|Hg17|chr2 (29287201-29287346)
               

               
               109-251, gnl|Mm7|chr17 (70106063-70106205)
               


               
               340-528, gnl|bosTau2|chr11 (50543168-50543356)
               

               
               340-528, gnl|canFam2|chr17 (26084233-26084406)
               

               
               340-528, gnl|dasNov1|scaffold_124425 (6253-6425)
               

               
               340-528, gnl|echTel1|scaffold_322859 (5278-5444)
               

               
               340-528, gnl|galGal2|chr3 (8673572-8673737)
               

               
               340-528, gnl|hg17|chr2 (29291703-29291869)
               

               
               340-528, gnl|Hg17|chr2 (29291720-29291908)
               

               
               340-528, gnl|loxAfr1|scaffold_63106 (643-809)
               

               
               340-528, gnl|mm7|chr17 (70109862-70110029)
               

               
               340-528, gnl|Mm7|chr17 (70109880-70110068)
               

               
               340-528, gnl|monDom2|scaffold_1 (146383781-146383614)
               

               
               340-528, gnl|oryCun1|scaffold_215351 (91257-91085)
               

               
               340-528, gnl|panTro1|chr12 (30250639-30250805)
               

               
               340-528, gnl|rheMac2|chr13 (29152566-29152738)
               

               
               340-528, gnl|rn3|chr6 (23766794-23766625)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.415628)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	409-528, - strand, RNAz p=0.552641
	412-528, - strand, RNAz p=0.969724

	109-251, gnl\|bosTau2\|chr11 (50507905-50508047)
	109-251, gnl\|Hg17\|chr2 (29287201-29287346)
	109-251, gnl\|Mm7\|chr17 (70106063-70106205)

	340-528, gnl\|bosTau2\|chr11 (50543168-50543356)
	340-528, gnl\|canFam2\|chr17 (26084233-26084406)
	340-528, gnl\|dasNov1\|scaffold_124425 (6253-6425)
	340-528, gnl\|echTel1\|scaffold_322859 (5278-5444)
	340-528, gnl\|galGal2\|chr3 (8673572-8673737)
	340-528, gnl\|hg17\|chr2 (29291703-29291869)
	340-528, gnl\|Hg17\|chr2 (29291720-29291908)
	340-528, gnl\|loxAfr1\|scaffold_63106 (643-809)
	340-528, gnl\|mm7\|chr17 (70109862-70110029)
	340-528, gnl\|Mm7\|chr17 (70109880-70110068)
	340-528, gnl\|monDom2\|scaffold_1 (146383781-146383614)
	340-528, gnl\|oryCun1\|scaffold_215351 (91257-91085)
	340-528, gnl\|panTro1\|chr12 (30250639-30250805)
	340-528, gnl\|rheMac2\|chr13 (29152566-29152738)
	340-528, gnl\|rn3\|chr6 (23766794-23766625)