Non-Coding RNA Search

Ss1.1-rthg01_c17.5

Sequence:


               
               TCATTCATTTAGTTGTCCCTGGAAATTTAGGCACTAAGAGGACTTGAAAGTTAACCTGGT
AATTGTGTAAAAAATAAAAATGGGCTCTGTATCTTTGGTAACAAAGAGGTGCTGATGTTT
TCAATAGAAAATAATGACTCTGTGTCACAATATAGAGATTTTGAGTCCCAGAGTCCTACA
ATGTGATGATTATAAATATGCTAGTGTTCAGTCTAGAAAGACTTGCTAGTAAAGAATGTG
AGACTTTCTCAAAGGTCCAGTTTAGTTTTTATAACTTAACTTGGTCCTATTGGGTCCTTT
TTAATTTGAACCAACAAGGTACCTCCCTCCCCTCAGGAATAACTTATTGATTAAAGCTGA
AAACTATCGCTGAATGGAATGTTCATTTTATGCCAGATATTTCAAGTTTTAAAATACACC
GAAGGGAAAAAATATTGTGGAAGGACCTGTGTTTCTTTCCCATCTGATTTCTTTTTTCCC
CCTTTTTGTTTTTCTGTCCTTACATGGAAGAAGTAAAGACTCTAAAACTGATTTGTATAT
TATCAACCAGAGATGCAGGGGTGGCAGTCAAGCCAGACAACATTGCTTTGAGATCAGGTG
TTCTGCACATTTATTCTAAGGTGGTAAATTTTCAAAAGGATTTGGATTCAAAGAGATGGC
AGATGATAAGCCATCTGAAGACCCAATTTGGAAAAAAATGTATGTAGCCAATGTTTATAT
TGTGGCCTCTCCTAAGACACACTGACAGTGTAGTGTGAAAATTATGGAGTACCTTACATA
TATATTTTACATTTTTATTGTTTGATTTGTGCCCACATAAACAGACATTTCATCATGTAA
AATTCCTGTTATTCTGGGAAAACCTATTGTTTTGATCTTGAATTGTTTTCTGATTTGGAA
TTATCCTTTCAAAAAACTCTTACGATATGTAGGACTAAAAAGCACTTCATGAGATGCTAA
AGCTGACCCACAGGTTGAAAATGTTGACCCTATCCTGTTATTTAAATGTGAACATTTATT
GTACATTCAGTGAGTTATAGTGTTAATAGTCTTGTGCTATTCAGCAGGTGTAAAAATTAA
TAAATATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTCATTTAGTTGTCCCTGGAAATTTAGGCACTAAGAGGACTTGAAAGTTAACCTGGT
AATTGTGTAAAAAATAAAAATGGGCTCTGTATCTTTGGTAACAAAGAGGTGCTGATGTTT
TCAATAGAAAATAATGACTCTGTGTCACAATATAGAGATTTTGAGTCCCAGAGTCCTACA
ATGTGATGATTATAAATATGCTAGTGTTCAGTCTAGAAAGACTTGCTAGTAAAGAATGTG
AGACTTTCTCAAAGGTCCAGTTTAGTTTTTATAACTTAACTTGGTCCTATTGGGTCCTTT
TTAATTTGAACCAACAAGGTACCTCCCTCCCCTCAGGAATAACTTATTGATTAAAGCTGA
AAACTATCGCTGAATGGAATGTTCATTTTATGCCAGATATTTCAAGTTTTAAAATACACC
GAAGGGAAAAAATATTGTGGAAGGACCTGTGTTTCTTTCCCATCTGATTTCTTTTTTCCC
CCTTTTTGTTTTTCTGTCCTTACATGGAAGAAGTAAAGACTCTAAAACTGATTTGTATAT
TATCAACCAGAGATGCAGGGGTGGCAGTCAAGCCAGACAACATTGCTTTGAGATCAGGTG
TTCTGCACATTTATTCTAAGGTGGTAAATTTTCAAAAGGATTTGGATTCAAAGAGATGGC
AGATGATAAGCCATCTGAAGACCCAATTTGGAAAAAAATGTATGTAGCCAATGTTTATAT
TGTGGCCTCTCCTAAGACACACTGACAGTGTAGTGTGAAAATTATGGAGTACCTTACATA
TATATTTTACATTTTTATTGTTTGATTTGTGCCCACATAAACAGACATTTCATCATGTAA
AATTCCTGTTATTCTGGGAAAACCTATTGTTTTGATCTTGAATTGTTTTCTGATTTGGAA
TTATCCTTTCAAAAAACTCTTACGATATGTAGGACTAAAAAGCACTTCATGAGATGCTAA
AGCTGACCCACAGGTTGAAAATGTTGACCCTATCCTGTTATTTAAATGTGAACATTTATT
GTACATTCAGTGAGTTATAGTGTTAATAGTCTTGTGCTATTCAGCAGGTGTAAAAATTAA
TAAATATTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               883-1000, - strand, RNAz p=0.526676

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               883-1000, - strand, RNAz p=0.526676

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr29 (29404589-29405694)
               

               
               1-1092, gnl|Hg17|chr11 (129275936-129274846)
               

               
               1-1092, gnl|Mm7|chr9 (31282906-31284143)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr29 (29404589-29405694)
               

               
               1-1092, gnl|Hg17|chr11 (129275936-129274846)
               

               
               1-1092, gnl|Mm7|chr9 (31282906-31284143)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               thg (0.253582)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

	1-1092, gnl\|bosTau2\|chr29 (29404589-29405694)
	1-1092, gnl\|Hg17\|chr11 (129275936-129274846)
	1-1092, gnl\|Mm7\|chr9 (31282906-31284143)

	thg (0.253582)
	sag (0.182715)
	fty (0.17584)
	sin (0.174948)
	lun (0.150489)
	isp (0.150376)
	ret (0.128733)
	ebs (0.118301)