Non-Coding RNA Search

Ss1.1-rthg01_d14.5

Sequence:


               
               CATTTCCTCATCCCCCTCCAAGTTTAGCTGGATTGCAAAGTTAAGTTTATGATTATGAAA
TAAAAACTAAACAACAACTGTCTGTCCTTGTATGGGTTAGGGTATTGATGTAGGTTTCAT
TTCTTTTTGCTTTTTTTTTGTCTCTATAGGGCCAGAGCTGCAACATATGGAACTTCCCAG
GCTAGGGGTTGAATCAAGAGCTGTGACCTACACCACACCTCACAGCAATGCTGGGTCCTT
GACCCACTGAGCAAGGCCAGGGATTGAAACCTGCATTGTCATGGATCCTAGTTGGGTTTG
TTGCTGGTGAGACACCATGAGGGGAACTCCAATGTAAGTTTTATTTTGATTTTGTTGACT
GAGCATCCCGAGGACAAGTTGCAAATGGAACACCAAAGCTGTGGGAGGGACAAGATGGAC
CTTCAAGGTCATGACCTTTTTGGACCAGGGCTCCTTAGAGAGAAGGAAATTCTCCCTTGA
TAGATTGGGGGGGGGGTGTCCAAAGCCATCAAAGTTAAGTTGGAAGTCAACTAGGAGTTG
CTGTAGTGGCTCAGTGCTAACAGCTCAGCTGTTATCCATGAGACTTTCGGATTTGATCCC
CGTCCCTGCTCAGTGGGTTAAGGATATGGAGTTTCCTTGAGCTTCACTGGGTCACAGACA
TGGCTCAGATCTGGTGTGGCTGTGGCATCTACCAGCAGCTTCAGTGCTGATGCAACCCAT
AGCCTGGAAATTTGCATGTACCTCAGGTGTGGCCCTAAAAATTTCAAAAAGCAAAACTTT
GGATTTCCCTGCAGTGGCAACTATTTATAAAGCATTTACATTGTATTTACAACTATATAT
ATATTAATGTATTCTGTAGAAGTTACAAAGTATATGGGAGGATGTCTGGATGTTATGTGC
AAATGCTATACTACTGTATTTAAATGTTCAAATTTGCAGGCCATGCCCTCAACATGCAGA
AATTGCTGGGCCAGGTAAGGAACCTGCACCATAGCACTAACAATGCAGGATCCTCAACCA
CTAGCAACCAGGGAATTCTAACCATGCCATTTTATATAAAGGACTTGAGAACGTACTGTG
GGTTTGGATATGTGTGGGGTTCCTGAAACCAATCTCCCATGGGTATCAAGGGACGACTGT
ATTTGCCTCACCTTGGAATGTTTAATATACTGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTCCTCATCCCCCTCCAAGTTTAGCTGGATTGCAAAGTTAAGTTTATGATTATGAAA
TAAAAACTAAACAACAACTGTCTGTCCTTGTATGGGTTAGGGTATTGATGTAGGTTTCAT
TTCTTTTTGCTTTTTTTTTGTCTCTATAGGGCCAGAGCTGCAACATATGGAACTTCCCAG
GCTAGGGGTTGAATCAAGAGCTGTGACCTACACCACACCTCACAGCAATGCTGGGTCCTT
GACCCACTGAGCAAGGCCAGGGATTGAAACCTGCATTGTCATGGATCCTAGTTGGGTTTG
TTGCTGGTGAGACACCATGAGGGGAACTCCAATGTAAGTTTTATTTTGATTTTGTTGACT
GAGCATCCCGAGGACAAGTTGCAAATGGAACACCAAAGCTGTGGGAGGGACAAGATGGAC
CTTCAAGGTCATGACCTTTTTGGACCAGGGCTCCTTAGAGAGAAGGAAATTCTCCCTTGA
TAGATTGGGGGGGGGGTGTCCAAAGCCATCAAAGTTAAGTTGGAAGTCAACTAGGAGTTG
CTGTAGTGGCTCAGTGCTAACAGCTCAGCTGTTATCCATGAGACTTTCGGATTTGATCCC
CGTCCCTGCTCAGTGGGTTAAGGATATGGAGTTTCCTTGAGCTTCACTGGGTCACAGACA
TGGCTCAGATCTGGTGTGGCTGTGGCATCTACCAGCAGCTTCAGTGCTGATGCAACCCAT
AGCCTGGAAATTTGCATGTACCTCAGGTGTGGCCCTAAAAATTTCAAAAAGCAAAACTTT
GGATTTCCCTGCAGTGGCAACTATTTATAAAGCATTTACATTGTATTTACAACTATATAT
ATATTAATGTATTCTGTAGAAGTTACAAAGTATATGGGAGGATGTCTGGATGTTATGTGC
AAATGCTATACTACTGTATTTAAATGTTCAAATTTGCAGGCCATGCCCTCAACATGCAGA
AATTGCTGGGCCAGGTAAGGAACCTGCACCATAGCACTAACAATGCAGGATCCTCAACCA
CTAGCAACCAGGGAATTCTAACCATGCCATTTTATATAAAGGACTTGAGAACGTACTGTG
GGTTTGGATATGTGTGGGGTTCCTGAAACCAATCTCCCATGGGTATCAAGGGACGACTGT
ATTTGCCTCACCTTGGAATGTTTAATATACTGCTCA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               3-122, gnl|bosTau2|chr4 (43080610-43080726)
               

               
               3-122, gnl|Hg17|chr7 (44614393-44614509)
               

               
               3-122, gnl|Mm7|chr11 (6371742-6371853)
               


               
               757-1141, gnl|bosTau2|chr25 (22963600-22964005)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-122, gnl|bosTau2|chr4 (43080610-43080726)
               

               
               3-122, gnl|Hg17|chr7 (44614393-44614509)
               

               
               3-122, gnl|Mm7|chr11 (6371742-6371853)
               


               
               757-1141, gnl|bosTau2|chr25 (22963600-22964005)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               hyp (0.285673)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	3-122, gnl\|bosTau2\|chr4 (43080610-43080726)
	3-122, gnl\|Hg17\|chr7 (44614393-44614509)
	3-122, gnl\|Mm7\|chr11 (6371742-6371853)

	757-1141, gnl\|bosTau2\|chr25 (22963600-22964005)

	hyp (0.285673)
	sin (0.174948)
	duo (0.172801)
	fco (0.157208)
	nmm (0.132802)
	cov (0.132153)
	thg (0.126791)
	ecc (0.115035)
	spc (0.113366)