Ss1.1-rthg01_l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACTAGGAAAGACTAAGAAACTGTCACAGAGGAGAAAAAGACTAATGAGTCTGAGCACT CAGTCCAAGATTGGATCCTGGAGCAAACACAGGTCTTGTGGAAAAAAACCGTGAAATCCA AACGAAGCCTGGAGGTTAGATAGTAATATGGCAAAGACTTCACTGTTGAGAATCCCTGGG ACGAGGAGTTGATTCTCAAACTTTTATCCGGGCTTTCTAAGCCAGTGAGTTCCTATCCAA ATATCTATGAGTGGCAGTGTAAACTTCCAGCCATCAAGCCCAAGACTGAATTTCAATTGG GTTCTCTGGTGGTCTATGTTGATCACCTTCTTGGAGAAGGGGCTTTTGCCCAAGTCTATG AAGTTACCCACGGGGATGTGAACGATAACAAAAACAAACAGAAATTTGTTCTGAAGGTCC AGAAGCCTGCCAACCCCTGGGAATTCTACATTGGGACCCAGCTCATGGAGAGACTAAAGC CAAGTATGCGGCACATGTTTATCAAATTCTATTCTGCCCACCTGTTCCAGAATGGCAGTG TGTTAGTAGGAGATCTCTACAGCTACGGGACATTATTGAATGCCATTAACCTCTATAAAA ATACCCCTGAGAAAGTGATGCCTCAAGCTCTAGTCCTCACTTTTGCCATCAGGATGCTCT GCATGATTGAACAAGTCCATGACTGTGAAATCATCCATGGAGACATCAAGCCAGACAACT TCATACTTGGAAACAGATTTTTGGAACAGGACGGTGAGGATGATGGCTTGGCACTGATTG ACCTGGGTCAGAGTATAGACATGAAACTTTTTCCAAAAGGAACTGCATTTACGGGAAAGT GTGAAACATCTGGTTTTCAGTGTGTTGAGATGCTCAGTAACAGGCCCTGGAACTACCAGA TTGATTACTTTGGAGTTGCTGCGACAGTGTACTGCATGCTTTTTGGCACGTACATGAAAG TGAAAAATGAAGGAGGGGTCTGGAAGCCTGAAGGTCTATTTAGAAGGCTTCCTCACTTGG ATATGTGGAATGAATTTTTTCACATAATGTTGAATATACCAGATTGTCATCATCTCCCAC CTTTGGATTTAATAAGGCAGAAGCTAAAGCAAGTATTTCAAGAACACTATGCAAACAAGA TTAAGACCCTACGTAATAGGCTAATTGTACTACTCTTGGAATATAAGCGTTCTCGAAAAT AAAATATGGACACTTCCTAAAACTCACTCTGTAAATGCTGGCCTGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACTAGGAAAGACTAAGAAACTGTCACAGAGGAGAAAAAGACTAATGAGTCTGAGCACT CAGTCCAAGATTGGATCCTGGAGCAAACACAGGTCTTGTGGAAAAAAACCGTGAAATCCA AACGAAGCCTGGAGGTTAGATAGTAATATGGCAAAGACTTCACTGTTGAGAATCCCTGGG ACGAGGAGTTGATTCTCAAACTTTTATCCGGGCTTTCTAAGCCAGTGAGTTCCTATCCAA ATATCTATGAGTGGCAGTGTAAACTTCCAGCCATCAAGCCCAAGACTGAATTTCAATTGG GTTCTCTGGTGGTCTATGTTGATCACCTTCTTGGAGAAGGGGCTTTTGCCCAAGTCTATG AAGTTACCCACGGGGATGTGAACGATAACAAAAACAAACAGAAATTTGTTCTGAAGGTCC AGAAGCCTGCCAACCCCTGGGAATTCTACATTGGGACCCAGCTCATGGAGAGACTAAAGC CAAGTATGCGGCACATGTTTATCAAATTCTATTCTGCCCACCTGTTCCAGAATGGCAGTG TGTTAGTAGGAGATCTCTACAGCTACGGGACATTATTGAATGCCATTAACCTCTATAAAA ATACCCCTGAGAAAGTGATGCCTCAAGCTCTAGTCCTCACTTTTGCCATCAGGATGCTCT GCATGATTGAACAAGTCCATGACTGTGAAATCATCCATGGAGACATCAAGCCAGACAACT TCATACTTGGAAACAGATTTTTGGAACAGGACGGTGAGGATGATGGCTTGGCACTGATTG ACCTGGGTCAGAGTATAGACATGAAACTTTTTCCAAAAGGAACTGCATTTACGGGAAAGT GTGAAACATCTGGTTTTCAGTGTGTTGAGATGCTCAGTAACAGGCCCTGGAACTACCAGA TTGATTACTTTGGAGTTGCTGCGACAGTGTACTGCATGCTTTTTGGCACGTACATGAAAG TGAAAAATGAAGGAGGGGTCTGGAAGCCTGAAGGTCTATTTAGAAGGCTTCCTCACTTGG ATATGTGGAATGAATTTTTTCACATAATGTTGAATATACCAGATTGTCATCATCTCCCAC CTTTGGATTTAATAAGGCAGAAGCTAAAGCAAGTATTTCAAGAACACTATGCAAACAAGA TTAAGACCCTACGTAATAGGCTAATTGTACTACTCTTGGAATATAAGCGTTCTCGAAAAT AAAATATGGACACTTCCTAAAACTCACTCTGTAAATGCTGGCCTGCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 154-302, gnl|bosTau2|chr11 (204842-204694) | |
| 154-302, gnl|Hg17|chr2 (111123189-111123041) | |
| 154-302, gnl|Mm7|chr2 (127547225-127547077) | |
| 407-577, gnl|bosTau2|chr11 (199626-199456) | |
| 407-577, gnl|canFam2|chr17 (38320810-38321002) | |
| 407-577, gnl|danRer3|chr20 (2872693-2872885) | |
| 407-577, gnl|dasNov1|scaffold_15504 (1497-1680) | |
| 407-577, gnl|echTel1|scaffold_160489 (2415-2607) | |
| 407-577, gnl|fr1|chrUn (67253403-67253231) | |
| 407-577, gnl|galGal2|chr3 (3024583-3024397) | |
| 407-577, gnl|hg17|chr2 (111115446-111115638) | |
| 407-577, gnl|Hg17|chr2 (111115622-111115452) | |
| 407-577, gnl|loxAfr1|scaffold_3101 (105141-105333) | |
| 407-577, gnl|mm7|chr2 (127545657-127545854) | |
| 407-577, gnl|Mm7|chr2 (127545833-127545663) | |
| 407-577, gnl|monDom2|scaffold_1 (65701714-65701520) | |
| 407-577, gnl|oryCun1|scaffold_76777 (847-654) | |
| 407-577, gnl|panTro1|chr12 (114224376-114224568) | |
| 407-577, gnl|rheMac2|chr13 (110007904-110007712) | |
| 407-577, gnl|rn3|chr3 (115233767-115233964) | |
| 407-577, gnl|tetNig1|chr14 (9306300-9306472) | |
| 407-577, gnl|xenTro1|scaffold_695 (646767-646958) | |
| 765-909, gnl|bosTau2|chr11 (198983-198839) | |
| 765-909, gnl|Hg17|chr2 (111114977-111114833) | |
| 765-909, gnl|Mm7|chr2 (127545169-127545019) | |
| 1005-1248, gnl|bosTau2|chr11 (197195-196952) | |
| 1005-1248, gnl|Hg17|chr2 (111111970-111111721) | |
| 1005-1248, gnl|Mm7|chr2 (127542293-127542048) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 154-302, gnl|bosTau2|chr11 (204842-204694) | |
| 154-302, gnl|Hg17|chr2 (111123189-111123041) | |
| 154-302, gnl|Mm7|chr2 (127547225-127547077) | |
| 407-577, gnl|bosTau2|chr11 (199626-199456) | |
| 407-577, gnl|canFam2|chr17 (38320810-38321002) | |
| 407-577, gnl|danRer3|chr20 (2872693-2872885) | |
| 407-577, gnl|dasNov1|scaffold_15504 (1497-1680) | |
| 407-577, gnl|echTel1|scaffold_160489 (2415-2607) | |
| 407-577, gnl|fr1|chrUn (67253403-67253231) | |
| 407-577, gnl|galGal2|chr3 (3024583-3024397) | |
| 407-577, gnl|hg17|chr2 (111115446-111115638) | |
| 407-577, gnl|Hg17|chr2 (111115622-111115452) | |
| 407-577, gnl|loxAfr1|scaffold_3101 (105141-105333) | |
| 407-577, gnl|mm7|chr2 (127545657-127545854) | |
| 407-577, gnl|Mm7|chr2 (127545833-127545663) | |
| 407-577, gnl|monDom2|scaffold_1 (65701714-65701520) | |
| 407-577, gnl|oryCun1|scaffold_76777 (847-654) | |
| 407-577, gnl|panTro1|chr12 (114224376-114224568) | |
| 407-577, gnl|rheMac2|chr13 (110007904-110007712) | |
| 407-577, gnl|rn3|chr3 (115233767-115233964) | |
| 407-577, gnl|tetNig1|chr14 (9306300-9306472) | |
| 407-577, gnl|xenTro1|scaffold_695 (646767-646958) | |
| 765-909, gnl|bosTau2|chr11 (198983-198839) | |
| 765-909, gnl|Hg17|chr2 (111114977-111114833) | |
| 765-909, gnl|Mm7|chr2 (127545169-127545019) | |
| 1005-1248, gnl|bosTau2|chr11 (197195-196952) | |
| 1005-1248, gnl|Hg17|chr2 (111111970-111111721) | |
| 1005-1248, gnl|Mm7|chr2 (127542293-127542048) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| tes (0.415628) | |
| rec (0.346141) | |
| thg (0.253582) | |
| lin (0.145603) | |
| spl (0.143184) | |
| ova (0.129132) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| rec (0.346141) | |
| thg (0.253582) | |
| lin (0.145603) | |
| spl (0.143184) | |
| ova (0.129132) | |
| cty (0.10408) |