Ss1.1-rthg01_l13.5.5
|
CCTTTGGCGTCGTTCAAGATCCTGTCTCTGGAGGAGACCGAGAGCCACGGCAGCTATTCC
TCGGGCAACGACATCGGGCCTTTTGGAGAGCGAGATGACCAGCAGGTGTTTATCCAGAAG
GTGGTTCCCATCACCAACAAACTCTTCGTCAGACTCTCATCTACCGGGAAAAGAATCTGT
GAGATCCAAGCTGTTGACTGTACCACAATATCCTCATTTACAGTGAGAGAATGTGAGGGG
TCCAGCAGGATGGGTTCAAGGCCAAGGCGCTACTTGTTCACAGGCCACACGAACGGCAGC
ATTCAGATGTGGGATCTGACCACCGCGATGGACATGGTTAACAAAAGCGAGGACAAGGAT
GTCGGTGGTCCGACGGAGGAAGAGCTGCTCAAGTTACTGGATCAGTGCGACCTGAGCACA
TCTCGCTGTGCCACTCCCAACATCAGTCCGGCAACTTCTGTCGTTCAGCATAGCCGTCTC
CGCGAATCAAATTCTAGCCTTCAGCTCCAGCACCACGAAACCATCCATGAAGCAGCTACT
TACGGTTCCATGAGGCCTTACAGAGAAAGTCCCTTGTTAGCAAGAGCAAGGAGGACTGAG
AGCTTTCACAGTTACAGGGACTTCCAGACTGTTAACCTGAACAGAAACGTAGAAAGAGCT
GTCCCTGAAAATGGCAACTTGGGGGCAGTACAAGCCGAAGTAAAGCTAGCCCCAGGGGAA
TGTAACGCGTCTGAGAGAAAGTCGCCTGGAACCGAAGTTAAAAACCTCAGAGAGTCAGAT
AGTGGAGTGGAGGTGCATAAAATAGCCGAAGGTTTTCTAGAAGGCAAGAAAAGGTCCTCA
GAAGATGAAAATGAAAATAAACTGGAGTTACGGAGGAAAGGAGGATTTGAAGGAGGAGGA
TTCCTTGGAAGAAAAAAAGTTCCTCACCTGGCCTCATCCCCAAGTACATCGGATGGAGGA
ACTGACTCCCCTGGTACTGCGTCCCCGTCTCCCACGAAGACGACGCCATCTCCTCGGCAC
AAAAAAAGTGATTCTTCAGGGCAAGAGTACAGCTTATGAAAGAAAACTCCGCAAAGTGAA
TAGTTGTTTTGTCAATTCTGTGAGTTAAACTTTCCTGGATTTCAGTATATTCGCTTTTAC
ACCAAAACTTTACACATTCAAATTAGACTTCTTTTTAACAGAATTACCTGGGATAAGGAG
ATGAAATAACCGTATCCCTGCTGATGCCCTTTGGGAAAATTTTTTTAGTTTTACCAGCAC
ATTTAACAGATCATTTGTAAAGCAAGACTCCACTTCAGTGTTTCTCTGTGGATTTTGGAA
GCGTAGTACCCCATCTTCCTAAGACAGTGCCCATATAGGTGGGCATCCTGTTAGAGCATG
GGTACCAATGCCTTCCTAATCTTGATTATGCCTGAGGTTTGTCTTGCAATGTTATGTGAC
AGATATAACACATGAATTACATTGGAACTGAGTCTCCCAATCCTTATTGTGATTGCAAAG
TGTTTCCCAGATATTGAATGAGGTGCTATGTGTGTGAAAAATATGTAATTCAGAAACACT
ATTGATGTTGAATACCAGATTACACTAGTAGTAAGTCCTTTAGGATAATTGAAATTGTGG
TCATTTTCTGATTCTCATTGTTGGAGTTCTTAAGTCATAGCAAGTATCACCACTATGAAA
TGTCAAAAGTCCATTTAAACTTTCTTTAAAGTTGGAGCAGTTGTCTGTGTTTGAACAGAT
GAAATACAAAGACTAAAGACAAAGCTTTGAGTGCCCAGAAAGGAAAACTGAAGCCTTTGC
TAGTCTGCCTTGATTTAGGAGCCACCTGTTTTTTTCCCTGTGTTACTAATCAAGATAATT
ACATTAGAAGGTGGCCATTTTGTTAGACTACAGTTCTGAATTTTTGGTTAAAAGGTTTGG
CGGCTGTATAAAAATGTTATTTTAACTATATTTTGAATTATAAGAACAAAAAATTATTGC
ACTTTTCCCTCCACTTAATCAGAATGATTTCCAAGTTTCTGAAAACAAGGTAATTGTAAA
TTTAAAGCTTTAAGCATTTATTGGTGAATAATGTATATATTCCCATTCAGGAAATATAAG
TGAGCTGAGTCAAAATAAATCTTTAAAGTTTATTATGTTGCCAGTGGTCTCACACCCATT
CTCTTGTATTTATTTGTCAAGTCAAATAAAAATGATTAAGACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCTTTGGCGTCGTTCAAGATCCTGTCTCTGGAGGAGACCGAGAGCCACGGCAGCTATTCC
TCGGGCAACGACATCGGGCCTTTTGGAGAGCGAGATGACCAGCAGGTGTTTATCCAGAAG
GTGGTTCCCATCACCAACAAACTCTTCGTCAGACTCTCATCTACCGGGAAAAGAATCTGT
GAGATCCAAGCTGTTGACTGTACCACAATATCCTCATTTACAGTGAGAGAATGTGAGGGG
TCCAGCAGGATGGGTTCAAGGCCAAGGCGCTACTTGTTCACAGGCCACACGAACGGCAGC
ATTCAGATGTGGGATCTGACCACCGCGATGGACATGGTTAACAAAAGCGAGGACAAGGAT
GTCGGTGGTCCGACGGAGGAAGAGCTGCTCAAGTTACTGGATCAGTGCGACCTGAGCACA
TCTCGCTGTGCCACTCCCAACATCAGTCCGGCAACTTCTGTCGTTCAGCATAGCCGTCTC
CGCGAATCAAATTCTAGCCTTCAGCTCCAGCACCACGAAACCATCCATGAAGCAGCTACT
TACGGTTCCATGAGGCCTTACAGAGAAAGTCCCTTGTTAGCAAGAGCAAGGAGGACTGAG
AGCTTTCACAGTTACAGGGACTTCCAGACTGTTAACCTGAACAGAAACGTAGAAAGAGCT
GTCCCTGAAAATGGCAACTTGGGGGCAGTACAAGCCGAAGTAAAGCTAGCCCCAGGGGAA
TGTAACGCGTCTGAGAGAAAGTCGCCTGGAACCGAAGTTAAAAACCTCAGAGAGTCAGAT
AGTGGAGTGGAGGTGCATAAAATAGCCGAAGGTTTTCTAGAAGGCAAGAAAAGGTCCTCA
GAAGATGAAAATGAAAATAAACTGGAGTTACGGAGGAAAGGAGGATTTGAAGGAGGAGGA
TTCCTTGGAAGAAAAAAAGTTCCTCACCTGGCCTCATCCCCAAGTACATCGGATGGAGGA
ACTGACTCCCCTGGTACTGCGTCCCCGTCTCCCACGAAGACGACGCCATCTCCTCGGCAC
AAAAAAAGTGATTCTTCAGGGCAAGAGTACAGCTTATGAAAGAAAACTCCGCAAAGTGAA
TAGTTGTTTTGTCAATTCTGTGAGTTAAACTTTCCTGGATTTCAGTATATTCGCTTTTAC
ACCAAAACTTTACACATTCAAATTAGACTTCTTTTTAACAGAATTACCTGGGATAAGGAG
ATGAAATAACCGTATCCCTGCTGATGCCCTTTGGGAAAATTTTTTTAGTTTTACCAGCAC
ATTTAACAGATCATTTGTAAAGCAAGACTCCACTTCAGTGTTTCTCTGTGGATTTTGGAA
GCGTAGTACCCCATCTTCCTAAGACAGTGCCCATATAGGTGGGCATCCTGTTAGAGCATG
GGTACCAATGCCTTCCTAATCTTGATTATGCCTGAGGTTTGTCTTGCAATGTTATGTGAC
AGATATAACACATGAATTACATTGGAACTGAGTCTCCCAATCCTTATTGTGATTGCAAAG
TGTTTCCCAGATATTGAATGAGGTGCTATGTGTGTGAAAAATATGTAATTCAGAAACACT
ATTGATGTTGAATACCAGATTACACTAGTAGTAAGTCCTTTAGGATAATTGAAATTGTGG
TCATTTTCTGATTCTCATTGTTGGAGTTCTTAAGTCATAGCAAGTATCACCACTATGAAA
TGTCAAAAGTCCATTTAAACTTTCTTTAAAGTTGGAGCAGTTGTCTGTGTTTGAACAGAT
GAAATACAAAGACTAAAGACAAAGCTTTGAGTGCCCAGAAAGGAAAACTGAAGCCTTTGC
TAGTCTGCCTTGATTTAGGAGCCACCTGTTTTTTTCCCTGTGTTACTAATCAAGATAATT
ACATTAGAAGGTGGCCATTTTGTTAGACTACAGTTCTGAATTTTTGGTTAAAAGGTTTGG
CGGCTGTATAAAAATGTTATTTTAACTATATTTTGAATTATAAGAACAAAAAATTATTGC
ACTTTTCCCTCCACTTAATCAGAATGATTTCCAAGTTTCTGAAAACAAGGTAATTGTAAA
TTTAAAGCTTTAAGCATTTATTGGTGAATAATGTATATATTCCCATTCAGGAAATATAAG
TGAGCTGAGTCAAAATAAATCTTTAAAGTTTATTATGTTGCCAGTGGTCTCACACCCATT
CTCTTGTATTTATTTGTCAAGTCAAATAAAAATGATTAAGACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|28278794|gb|AAH45196.1| |
Protein identifier
|
gi|28278794|gb|AAH45196.1| |
|
1102-1408, gnl|bosTau2|chr5 (41931627-41931317) |
|
1102-1408, gnl|canFam2|chr38 (14058464-14058788) |
|
1102-1408, gnl|dasNov1|scaffold_15222 (47783-47453) |
|
1102-1408, gnl|echTel1|scaffold_286530 (43289-42972) |
|
1102-1408, gnl|hg17|chr1 (212182389-212182718) |
|
1102-1408, gnl|Hg17|chr1 (212182398-212182752) |
|
1102-1408, gnl|loxAfr1|scaffold_71003 (6115-5775) |
|
1102-1408, gnl|mm7|chr1 (188504407-188504114) |
|
1102-1408, gnl|Mm7|chr1 (83212255-83211943) |
|
1102-1408, gnl|monDom2|scaffold_13 (20506785-20507117) |
|
1102-1408, gnl|oryCun1|scaffold_212884 (118029-118354) |
|
1102-1408, gnl|panTro1|chr1 (195898040-195898369) |
|
1102-1408, gnl|rheMac2|chr1 (154801054-154800725) |
|
1102-1408, gnl|rn3|chr13 (105307523-105307225) |
| |
|
1184-1373, gnl|bosTau2|chr3 (3064293-3064490) |
|
1184-1373, gnl|Hg17|chr1 (212182490-212182680) |
| |
|
1755-2213, gnl|bosTau2|chr17 (24854731-24854260) |
|
1755-2213, gnl|Hg17|chr1 (212183089-212183538) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1102-1408, gnl|bosTau2|chr5 (41931627-41931317) |
|
1102-1408, gnl|canFam2|chr38 (14058464-14058788) |
|
1102-1408, gnl|dasNov1|scaffold_15222 (47783-47453) |
|
1102-1408, gnl|echTel1|scaffold_286530 (43289-42972) |
|
1102-1408, gnl|hg17|chr1 (212182389-212182718) |
|
1102-1408, gnl|Hg17|chr1 (212182398-212182752) |
|
1102-1408, gnl|loxAfr1|scaffold_71003 (6115-5775) |
|
1102-1408, gnl|mm7|chr1 (188504407-188504114) |
|
1102-1408, gnl|Mm7|chr1 (83212255-83211943) |
|
1102-1408, gnl|monDom2|scaffold_13 (20506785-20507117) |
|
1102-1408, gnl|oryCun1|scaffold_212884 (118029-118354) |
|
1102-1408, gnl|panTro1|chr1 (195898040-195898369) |
|
1102-1408, gnl|rheMac2|chr1 (154801054-154800725) |
|
1102-1408, gnl|rn3|chr13 (105307523-105307225) |
| |
|
1184-1373, gnl|bosTau2|chr3 (3064293-3064490) |
|
1184-1373, gnl|Hg17|chr1 (212182490-212182680) |
| |
|
1755-2213, gnl|bosTau2|chr17 (24854731-24854260) |
|
1755-2213, gnl|Hg17|chr1 (212183089-212183538) |
|
liv (0.585137) |
|
rec (0.346141) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
bfe (0.299715) |
|
lnt (0.284616) |
|
kid (0.259471) |
|
thg (0.253582) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
nco (0.161734) |
|
fco (0.157208) |
|
lun (0.150489) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
liv (0.585137) |
|
rec (0.346141) |
|
mga (0.32041) |
|
tbr (0.308356) |
|
bfe (0.299715) |
|
lnt (0.284616) |
|
kid (0.259471) |
|
thg (0.253582) |
|
tra (0.246184) |
|
mgp (0.230681) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
nco (0.161734) |
|
fco (0.157208) |
|
lun (0.150489) |
|
fat (0.147427) |
|
lin (0.145603) |
|
spl (0.143184) |
|
ste (0.135208) |
|
lyg (0.133103) |
|
ova (0.129132) |
|
sug (0.127291) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
