Non-Coding RNA Search

Ss1.1-rthg01_l18.5

Sequence:


               
               ACAGCAATGCCAGATCCTTAACCCACCGAGCAAGGCCAGGGATCGAACCTGCATCCTCAT
GGCTACTAGTCAGGTTTGTTACTGATGAGCCACAATAGGAACTCCCTTCTACCTTTATTT
TTATGGAAAGATTTAGTGAAAGTAAAGATCAGAAGCACAATGCAAATCTAGTTCATTGTA
AACTTATTAACTTTGTGCCGCATGACTACCTTCTCTGAAGGCTGGAGCCCAGGGTTTTAA
TTATTCATGTGCAACGATGGTAGCTGGCATTTTACTTGAATAGCATTTATGCTGTGATTT
TTTTACGTGCTATGTTTTGTGAGATAAAACTTGGGAATCAATGAAGTAGGACGTGTGGAA
ACATTTTGTTTTTTGAAACATGTTCACATAACTCATTTTTCCAGGTTTTGATCGTTGTGT
ACGTGTGTCATTGTCTTGTCAGCAGAGTTGTGTGTAATCAATAAATGTTGAATTAACAGA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCAATGCCAGATCCTTAACCCACCGAGCAAGGCCAGGGATCGAACCTGCATCCTCAT
GGCTACTAGTCAGGTTTGTTACTGATGAGCCACAATAGGAACTCCCTTCTACCTTTATTT
TTATGGAAAGATTTAGTGAAAGTAAAGATCAGAAGCACAATGCAAATCTAGTTCATTGTA
AACTTATTAACTTTGTGCCGCATGACTACCTTCTCTGAAGGCTGGAGCCCAGGGTTTTAA
TTATTCATGTGCAACGATGGTAGCTGGCATTTTACTTGAATAGCATTTATGCTGTGATTT
TTTTACGTGCTATGTTTTGTGAGATAAAACTTGGGAATCAATGAAGTAGGACGTGTGGAA
ACATTTTGTTTTTTGAAACATGTTCACATAACTCATTTTTCCAGGTTTTGATCGTTGTGT
ACGTGTGTCATTGTCTTGTCAGCAGAGTTGTGTGTAATCAATAAATGTTGAATTAACAGA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               108-481, gnl|bosTau2|chr23 (26729927-26729544)
               

               
               108-481, gnl|Hg17|chr6 (24645029-24645399)
               

               
               108-481, gnl|Mm7|chr13 (24273744-24273399)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-481, gnl|bosTau2|chr23 (26729927-26729544)
               

               
               108-481, gnl|Hg17|chr6 (24645029-24645399)
               

               
               108-481, gnl|Mm7|chr13 (24273744-24273399)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbe (0.239234)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               rec (0.17307)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	108-481, gnl\|bosTau2\|chr23 (26729927-26729544)
	108-481, gnl\|Hg17\|chr6 (24645029-24645399)
	108-481, gnl\|Mm7\|chr13 (24273744-24273399)

	cbe (0.239234)
	rec (0.17307)
	spl (0.143184)
	kid (0.129735)
	thg (0.126791)
	spc (0.113366)