Non-Coding RNA Search

Ss1.1-rthg01_n14.5.5

Sequence:


               
               CCATGTCTTCTGAACCATCTTTCCCAGCATGTAAGTGGGTAAAGTGTTCAGCTAAGTCTA
GTGAATAAGCAAAAGTGAATTTCTAACCAGTGAATTAAGTCCTTTCACTCGATTCCTGTC
CATTTAGTAAGGAAACCTAGAACCTACCCCCCTCCGGTCCCCACTAGCCAAGAAACTTAT
CTATCGCCATAAGTTGGGGACGGTCCACTTAGAGCACCTGCAGAAACAGCCTTCGTCGCG
ATGGGCATTCTCCTTCCAGACCACCCACGTGGAGCAGCCAACAGCCACGTAGAGGTGCTG
CTGCCCCTCAGCCCCAGGGCCAGCCACCTCCCTCCCAGGCTGTTTGGGTGGGTGGACCAA
GCTCCTGGGCGTGGGCGTTAGCTTTTGTTTGGTCCGCATTTTGGCCTCTTTAGTTTTCCT
AAAGCACAAGTCCACGTAGAATCCTGTCACCTATCCACACCAGTTTCAGATGCTCTGGGT
CCCCCCCCCACTGCCTCAGGAAGACCTTCACTGTACCTGAGCTTTTGACGTCTGCCACTG
CAGCTGCCTTAGTGACACCAGGGGCTGGGGGGGTGGGGGTAGCAAGGAGCCAGTTTGCAG
TTCCCGCCTTTCCTGGTTAGACTCCTGTTAACCATGTTCTTCTGTTAGCAAATCTGCTTC
CAGATTGATTTATGAGAACCATCACTTTCACATTCCTAACTTTGGTTTGTTTTGTTTGAT
TTCGTTTTGTTGTTCTGTTTGTTGTTTTTGTTTGATTTTCTGAATCTTCAAATGCTGCCC
TGAAAATAATGTCTTTTTTGAGTTTGTGTTCCGAAAGCCTCCGTGCTGCTGGATTTGGGG
GAGGGCCGGATACAGGATCCCCCAGCACTGAGGTGTTTAAGATTTGCAACTAGCAATGCA
ATTTTTTCTAAATATGAGGATATTTACCTTTATTAAGAAACTATACTAAACAATGGTATC
CTTGATCATTTTATCTTCTCATTTTATGTTTGGTTCTATTTTGATTCTGTGTGGTGGTAA
ACAAAGATCATTACAAACAAAAACTGTACTTTTATTATCTTTGATTCAATGGAATTTCTT
TACTTAAAAAAATAAAAGACTAAAAATGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGTCTTCTGAACCATCTTTCCCAGCATGTAAGTGGGTAAAGTGTTCAGCTAAGTCTA
GTGAATAAGCAAAAGTGAATTTCTAACCAGTGAATTAAGTCCTTTCACTCGATTCCTGTC
CATTTAGTAAGGAAACCTAGAACCTACCCCCCTCCGGTCCCCACTAGCCAAGAAACTTAT
CTATCGCCATAAGTTGGGGACGGTCCACTTAGAGCACCTGCAGAAACAGCCTTCGTCGCG
ATGGGCATTCTCCTTCCAGACCACCCACGTGGAGCAGCCAACAGCCACGTAGAGGTGCTG
CTGCCCCTCAGCCCCAGGGCCAGCCACCTCCCTCCCAGGCTGTTTGGGTGGGTGGACCAA
GCTCCTGGGCGTGGGCGTTAGCTTTTGTTTGGTCCGCATTTTGGCCTCTTTAGTTTTCCT
AAAGCACAAGTCCACGTAGAATCCTGTCACCTATCCACACCAGTTTCAGATGCTCTGGGT
CCCCCCCCCACTGCCTCAGGAAGACCTTCACTGTACCTGAGCTTTTGACGTCTGCCACTG
CAGCTGCCTTAGTGACACCAGGGGCTGGGGGGGTGGGGGTAGCAAGGAGCCAGTTTGCAG
TTCCCGCCTTTCCTGGTTAGACTCCTGTTAACCATGTTCTTCTGTTAGCAAATCTGCTTC
CAGATTGATTTATGAGAACCATCACTTTCACATTCCTAACTTTGGTTTGTTTTGTTTGAT
TTCGTTTTGTTGTTCTGTTTGTTGTTTTTGTTTGATTTTCTGAATCTTCAAATGCTGCCC
TGAAAATAATGTCTTTTTTGAGTTTGTGTTCCGAAAGCCTCCGTGCTGCTGGATTTGGGG
GAGGGCCGGATACAGGATCCCCCAGCACTGAGGTGTTTAAGATTTGCAACTAGCAATGCA
ATTTTTTCTAAATATGAGGATATTTACCTTTATTAAGAAACTATACTAAACAATGGTATC
CTTGATCATTTTATCTTCTCATTTTATGTTTGGTTCTATTTTGATTCTGTGTGGTGGTAA
ACAAAGATCATTACAAACAAAAACTGTACTTTTATTATCTTTGATTCAATGGAATTTCTT
TACTTAAAAAAATAAAAGACTAAAAATGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               567-684, + strand, RNAz p=0.919809
               

               
               764-915, - strand, RNAz p=0.992218

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               567-684, + strand, RNAz p=0.919809
               

               
               764-915, - strand, RNAz p=0.992218

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               827-945, + strand, RNAmicro p=0.999651

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               827-945, + strand, RNAmicro p=0.999651

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-1110, gnl|bosTau2|chr21 (16067888-16066756)
               

               
               2-1110, gnl|Mm7|chr7 (75232717-75233802)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1110, gnl|bosTau2|chr21 (16067888-16066756)
               

               
               2-1110, gnl|Mm7|chr7 (75232717-75233802)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cje (0.495704)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               jej (0.296765)
               

               
               csk (0.281492)
               

               
               pgl (0.236967)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.495704)
               

               
               cst (0.420109)
               

               
               hea (0.408998)
               

               
               ute (0.398353)
               

               
               aor (0.390549)
               

               
               jej (0.296765)
               

               
               csk (0.281492)
               

               
               pgl (0.236967)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	567-684, + strand, RNAz p=0.919809
	764-915, - strand, RNAz p=0.992218

	2-1110, gnl\|bosTau2\|chr21 (16067888-16066756)
	2-1110, gnl\|Mm7\|chr7 (75232717-75233802)

	cje (0.495704)
	cst (0.420109)
	hea (0.408998)
	ute (0.398353)
	aor (0.390549)
	jej (0.296765)
	csk (0.281492)
	pgl (0.236967)
	col (0.195008)
	sto (0.179824)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	cki (0.165235)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)
	spc (0.113366)