Non-Coding RNA Search

Ss1.1-rthg02_f14.5

Sequence:


               
               CTGCAAAATCAGCATTGAAACACTGGTGTGATTCTGAAAACCAGTGACCTCATTTTTTCG
GCTTTTGCAAAAGCATGACTTCTTTTTTGGCTTTTCATTTGGATTGCATTTTTTGGGGTT
GTTGACTGTACCTGTAGATGACTGTTACTTTGACTCTTTTCAGCAGCCCCTGAGTAGAAT
TCACAAGGTCTGTTTCCAGTATTTGCTTCGACTTAACTACGATTTGTTCTTGAAACGAAA
GTGAGCCTCTTTAAGCAAGCAAGCAAGCAGCCAATACTACCAAGGGAACTGCGAGACGGA
TACCACACAAACTTCTTGTATAGAAACATGAATGCTGAAATGTTTCCAACTGTTTTAATT
TAATAAACCTTGTAACCACATTTAAATGGTCTAAAACCCATAGCATTGTAGTCATGGCAA
CCTGCTAAACTTTCTTGCAACTAAAACTGAGGGTGGGGGTTGTACATTTTCCATTGTAAA
ATAAGTGTTTTAATGTCCTGTACTGCTAATGAAATGACTTTCTTTATGTCCAAGGGTTCT
CCAGTGAAATAACTATGCACTACTTTACATTTCATGGGGATGCACAAAAAAAAAAAAAAA
AAAAAAAGGAGTATTACATTTTTAGTTGCTGTTTGTACCAACCTTGAATTACATGTTTAA
CAACCACAAATCAAAAAGCCTATTTCTATTGAGTTTTTAATACTGACGAGCCACCCCAAA
GTCTTAATTCCTTTTTGTTATGATTTCTTTGTGAGTTTACATTTTTAAATTGTTTAACTT
TCTTAATTTAGTAATTAAAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAAAATCAGCATTGAAACACTGGTGTGATTCTGAAAACCAGTGACCTCATTTTTTCG
GCTTTTGCAAAAGCATGACTTCTTTTTTGGCTTTTCATTTGGATTGCATTTTTTGGGGTT
GTTGACTGTACCTGTAGATGACTGTTACTTTGACTCTTTTCAGCAGCCCCTGAGTAGAAT
TCACAAGGTCTGTTTCCAGTATTTGCTTCGACTTAACTACGATTTGTTCTTGAAACGAAA
GTGAGCCTCTTTAAGCAAGCAAGCAAGCAGCCAATACTACCAAGGGAACTGCGAGACGGA
TACCACACAAACTTCTTGTATAGAAACATGAATGCTGAAATGTTTCCAACTGTTTTAATT
TAATAAACCTTGTAACCACATTTAAATGGTCTAAAACCCATAGCATTGTAGTCATGGCAA
CCTGCTAAACTTTCTTGCAACTAAAACTGAGGGTGGGGGTTGTACATTTTCCATTGTAAA
ATAAGTGTTTTAATGTCCTGTACTGCTAATGAAATGACTTTCTTTATGTCCAAGGGTTCT
CCAGTGAAATAACTATGCACTACTTTACATTTCATGGGGATGCACAAAAAAAAAAAAAAA
AAAAAAAGGAGTATTACATTTTTAGTTGCTGTTTGTACCAACCTTGAATTACATGTTTAA
CAACCACAAATCAAAAAGCCTATTTCTATTGAGTTTTTAATACTGACGAGCCACCCCAAA
GTCTTAATTCCTTTTTGTTATGATTTCTTTGTGAGTTTACATTTTTAAATTGTTTAACTT
TCTTAATTTAGTAATTAAAAAGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-803, gnl|bosTau2|chr9 (19869929-19870732)
               

               
               1-803, gnl|Hg17|chr6 (112089029-112088246)
               

               
               1-803, gnl|Mm7|chr10 (39344371-39345155)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-803, gnl|bosTau2|chr9 (19869929-19870732)
               

               
               1-803, gnl|Hg17|chr6 (112089029-112088246)
               

               
               1-803, gnl|Mm7|chr10 (39344371-39345155)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               thg (0.253582)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               fhi (0.339155)
               

               
               thg (0.253582)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)

	1-803, gnl\|bosTau2\|chr9 (19869929-19870732)
	1-803, gnl\|Hg17\|chr6 (112089029-112088246)
	1-803, gnl\|Mm7\|chr10 (39344371-39345155)

	ebs (0.354904)
	fhi (0.339155)
	thg (0.253582)
	nep (0.183925)
	fbs (0.175346)
	ski (0.146735)