Non-Coding RNA Search

Ss1.1-rthg02_k20.5

Sequence:


               
               TGTTGTTGGAGAAAGGAGAGAAAGGAAAGCGCGAGGATCGTCGCCGCCGCCACCGCCGCC
GCCAGCGCCGCCGTGCCGGAGCCGAGGAGACCCGGCCGCCGCCCCGCCGCGCCTTCCGCC
GCCGGCTCCAGCGTCCTCGGACTGGTTCCAACAGCCTGTTAAAACATGGTGGATTACTAT
GAAGTTCTAGGCGTGCAGAGACATGCCTCAGCCGAGGATATTAAAAAGGCGTATCGGAAA
CTGGCACTGAAGTGGCATCCAGATAAAAATCCGGAGAATAAAGAAGAAGCAGAGAGAAAA
TTCAAGCAGGTTGCTGAGGCGTATGAGGTGTTATCAGACGCGAAAAAACGGGACATCTAT
GACAAATACGGCAAAGAAGGATTGAACGGTGGCAGTGGAGGTGGAAGTCATTTCGACAGT
CCGTTTGAGTTCGGCTTCACATTCCGAAATCCAGATGACGTCTTCAGGGAATTTTTTGGT
GGAAGGGATCCATTTTCTTTCGACCTCTTCGAAGACCCATTTGAGGACTTCTTTGGGAAT
CGAAGGACCCCCCGTGGAAGCCGGAGCCGGGGCACGGGATCCTTTTTCTCTGCTTTCAGC
GGATTTCCCCCCTTTGGAGGGGGCTTTTCCTCTTTTGATACAGGATTCACTTCCTTTGGT
TCCCTAGGTCACGGGGGCCTCACTTCCTTCTCTTCCACGGCGTTTGGTGGCAGTGGGATG
GGCAACTACAAATCGATATCCACTTCGACTAAAATGGTCAACGGCAGGAAAATCACCACG
AAGAGGATTGTGGAGAATGGACAGGAGAGGGTGGAAGTTGAAGAAGACGGCCAGTTGAAG
TCCTTGACGATAAATGGTAAGGAGCAGCTGCTGCGCTTGGATAACAAGTAGCTCGACGCA
CGCGGGTGGCAGCAGTGTTAACTCTAGCACACGCCGTTTGCGGATTAACAGGAACATTTT
TTTGAAGATTTCAGACGAACTCGACTTTCAGTATAACTGTACCTAATCTAAAGTATTTAT
ACACAGCTCATCGGAGCCTATTTGTCATAGACTTTTGAGTTTATTGTTGGGACCACGTAA
TAGGACCATTTTATTTTTTTGTCTTTAAACTTGTTGTAAATCTCTGTATGCACTTTGCTT
TTTTATTAAACGTAAGCCAAGGTGGCCGTGACTCTTCCTCCACTAACACCAGCACGGACC
TGCTTTTCCATTGTGTTTGAAACGTGAGCCAAGTAGTGTCAGCCTGCTGTGAAGTTAACA
TTGCCAGGACGAATCTTCACTAAAGTAATTTCAGTTTTTCAGTCTATAGTAGTGAAAGAT
AGTAATGCATTAATGGTGATACATTTCTGGTTTAATATAAACTGAGGATGTTTTCTAGTT
GTGCATGAATGCTGGCAACTTAGTAAGTTTTGACAATTGTTTAAATATGTAATGTTAAGC
TTAGGTTTAAAAAAGTAAAGCTGGTAAACTGGGTCTTTGTCATTTGCTTAAAAAAAAAAA
GAAAATAAATGCAAATGTGTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGTTGGAGAAAGGAGAGAAAGGAAAGCGCGAGGATCGTCGCCGCCGCCACCGCCGCC
GCCAGCGCCGCCGTGCCGGAGCCGAGGAGACCCGGCCGCCGCCCCGCCGCGCCTTCCGCC
GCCGGCTCCAGCGTCCTCGGACTGGTTCCAACAGCCTGTTAAAACATGGTGGATTACTAT
GAAGTTCTAGGCGTGCAGAGACATGCCTCAGCCGAGGATATTAAAAAGGCGTATCGGAAA
CTGGCACTGAAGTGGCATCCAGATAAAAATCCGGAGAATAAAGAAGAAGCAGAGAGAAAA
TTCAAGCAGGTTGCTGAGGCGTATGAGGTGTTATCAGACGCGAAAAAACGGGACATCTAT
GACAAATACGGCAAAGAAGGATTGAACGGTGGCAGTGGAGGTGGAAGTCATTTCGACAGT
CCGTTTGAGTTCGGCTTCACATTCCGAAATCCAGATGACGTCTTCAGGGAATTTTTTGGT
GGAAGGGATCCATTTTCTTTCGACCTCTTCGAAGACCCATTTGAGGACTTCTTTGGGAAT
CGAAGGACCCCCCGTGGAAGCCGGAGCCGGGGCACGGGATCCTTTTTCTCTGCTTTCAGC
GGATTTCCCCCCTTTGGAGGGGGCTTTTCCTCTTTTGATACAGGATTCACTTCCTTTGGT
TCCCTAGGTCACGGGGGCCTCACTTCCTTCTCTTCCACGGCGTTTGGTGGCAGTGGGATG
GGCAACTACAAATCGATATCCACTTCGACTAAAATGGTCAACGGCAGGAAAATCACCACG
AAGAGGATTGTGGAGAATGGACAGGAGAGGGTGGAAGTTGAAGAAGACGGCCAGTTGAAG
TCCTTGACGATAAATGGTAAGGAGCAGCTGCTGCGCTTGGATAACAAGTAGCTCGACGCA
CGCGGGTGGCAGCAGTGTTAACTCTAGCACACGCCGTTTGCGGATTAACAGGAACATTTT
TTTGAAGATTTCAGACGAACTCGACTTTCAGTATAACTGTACCTAATCTAAAGTATTTAT
ACACAGCTCATCGGAGCCTATTTGTCATAGACTTTTGAGTTTATTGTTGGGACCACGTAA
TAGGACCATTTTATTTTTTTGTCTTTAAACTTGTTGTAAATCTCTGTATGCACTTTGCTT
TTTTATTAAACGTAAGCCAAGGTGGCCGTGACTCTTCCTCCACTAACACCAGCACGGACC
TGCTTTTCCATTGTGTTTGAAACGTGAGCCAAGTAGTGTCAGCCTGCTGTGAAGTTAACA
TTGCCAGGACGAATCTTCACTAAAGTAATTTCAGTTTTTCAGTCTATAGTAGTGAAAGAT
AGTAATGCATTAATGGTGATACATTTCTGGTTTAATATAAACTGAGGATGTTTTCTAGTT
GTGCATGAATGCTGGCAACTTAGTAAGTTTTGACAATTGTTTAAATATGTAATGTTAAGC
TTAGGTTTAAAAAAGTAAAGCTGGTAAACTGGGTCTTTGTCATTTGCTTAAAAAAAAAAA
GAAAATAAATGCAAATGTGTTTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6FIC8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FIC8_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               165-521, gnl|bosTau2|chr22 (46102521-46102874)
               

               
               165-521, gnl|Hg17|chr3 (129664787-129664431)
               

               
               165-521, gnl|Mm7|chr6 (88297576-88297932)
               


               
               676-902, gnl|bosTau2|chr22 (46102996-46103227)
               

               
               676-902, gnl|Hg17|chr3 (129664309-129664082)
               

               
               676-902, gnl|Mm7|chr6 (88298048-88298275)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-521, gnl|bosTau2|chr22 (46102521-46102874)
               

               
               165-521, gnl|Hg17|chr3 (129664787-129664431)
               

               
               165-521, gnl|Mm7|chr6 (88297576-88297932)
               


               
               676-902, gnl|bosTau2|chr22 (46102996-46103227)
               

               
               676-902, gnl|Hg17|chr3 (129664309-129664082)
               

               
               676-902, gnl|Mm7|chr6 (88298048-88298275)

Expressed library(ies): 49 entry(ies)

More info

Expressed library(ies): 49 entry(ies)

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               pro (1.5361)
               

               
               thg (1.26791)
               

               
               sin (1.04969)
               

               
               fco (0.943248)
               

               
               fce (0.814775)
               

               
               cbe (0.717703)
               

               
               tes (0.623441)
               

               
               aor (0.585823)
               

               
               liv (0.585137)
               

               
               mga (0.480615)
               

               
               lin (0.436808)
               

               
               csk (0.422238)
               

               
               elu (0.385356)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               ebs (0.354904)
               

               
               rec (0.346141)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.5361)
               

               
               thg (1.26791)
               

               
               sin (1.04969)
               

               
               fco (0.943248)
               

               
               fce (0.814775)
               

               
               cbe (0.717703)
               

               
               tes (0.623441)
               

               
               aor (0.585823)
               

               
               liv (0.585137)
               

               
               mga (0.480615)
               

               
               lin (0.436808)
               

               
               csk (0.422238)
               

               
               elu (0.385356)
               

               
               tra (0.369276)
               

               
               mgm (0.360685)
               

               
               ebs (0.354904)
               

               
               rec (0.346141)
               

               
               ecc (0.345105)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               cki (0.330469)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	165-521, gnl\|bosTau2\|chr22 (46102521-46102874)
	165-521, gnl\|Hg17\|chr3 (129664787-129664431)
	165-521, gnl\|Mm7\|chr6 (88297576-88297932)

	676-902, gnl\|bosTau2\|chr22 (46102996-46103227)
	676-902, gnl\|Hg17\|chr3 (129664309-129664082)
	676-902, gnl\|Mm7\|chr6 (88298048-88298275)

	pro (1.5361)
	thg (1.26791)
	sin (1.04969)
	fco (0.943248)
	fce (0.814775)
	cbe (0.717703)
	tes (0.623441)
	aor (0.585823)
	liv (0.585137)
	mga (0.480615)
	lin (0.436808)
	csk (0.422238)
	elu (0.385356)
	tra (0.369276)
	mgm (0.360685)
	ebs (0.354904)
	rec (0.346141)
	ecc (0.345105)
	fhi (0.339155)
	vin (0.332557)
	nje (0.33184)
	cki (0.330469)
	ski (0.29347)
	cte (0.29274)
	pla (0.267344)
	lyg (0.266205)
	med (0.232504)
	jej (0.197844)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	mcp (0.170648)
	csp (0.161186)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	cst (0.140036)
	nca (0.136874)
	ssp (0.13552)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	eje (0.0988338)