Non-Coding RNA Search

Ss1.1-rthg02_n12.5

Sequence:


               
               AAAAATGTGAACTAAAAACTAAAGATGACTTGGGACCACCTGAAGAAGAAATAGTCGAAA
GGACAAGAAAGCCAAGTCTTTCTGAAAAGAAAAACAATCCATCAAAATGGGACGTCTCTT
CAATGTACCACACAATAGCTTCCTGGGCCACCAATCTCACGACTTTCATCAGGGAGGCCA
ATAAGGCCCTCTGGCTTTCTGTGGCTTTCATTGTACTGTTTGCAGCACTGATGAGCTTCT
TCACAGGCCGATTTTTCCAAAAGTCCGTGGATGCTGCTCCCACACAGGATGGGGACTCCT
GGATGACTCTGGAACGTATCTTGTGGCCATTTGCCAGACTCCGACACAATGGGCCTCCGC
CAGTGTGACATCCTAACGTGTGTATCTTGATTTTTAAAGTTTCAGTATCTGAACTTTGTA
AACTAGTAACTTTTAGCTGGGAGATTAGAGCATGGAACCACAGGTTCTTAGAATGATTTG
TAAGATATTTTATAGTCCCCCTTTTTGTGATGACCTTCCAAACTAAAATACAATGGGGAG
GAAGCCTGCCTATAAGATTTTTTAATGGGCTTTTTGAGGAGGCGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATGTGAACTAAAAACTAAAGATGACTTGGGACCACCTGAAGAAGAAATAGTCGAAA
GGACAAGAAAGCCAAGTCTTTCTGAAAAGAAAAACAATCCATCAAAATGGGACGTCTCTT
CAATGTACCACACAATAGCTTCCTGGGCCACCAATCTCACGACTTTCATCAGGGAGGCCA
ATAAGGCCCTCTGGCTTTCTGTGGCTTTCATTGTACTGTTTGCAGCACTGATGAGCTTCT
TCACAGGCCGATTTTTCCAAAAGTCCGTGGATGCTGCTCCCACACAGGATGGGGACTCCT
GGATGACTCTGGAACGTATCTTGTGGCCATTTGCCAGACTCCGACACAATGGGCCTCCGC
CAGTGTGACATCCTAACGTGTGTATCTTGATTTTTAAAGTTTCAGTATCTGAACTTTGTA
AACTAGTAACTTTTAGCTGGGAGATTAGAGCATGGAACCACAGGTTCTTAGAATGATTTG
TAAGATATTTTATAGTCCCCCTTTTTGTGATGACCTTCCAAACTAAAATACAATGGGGAG
GAAGCCTGCCTATAAGATTTTTTAATGGGCTTTTTGAGGAGGCGCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               17-127, - strand, RNAz p=0.915025

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               17-127, - strand, RNAz p=0.915025

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               17-127, gnl|bosTau2|chr5 (51803964-51803854)
               

               
               17-127, gnl|canFam2|chr27 (25386371-25386227)
               

               
               17-127, gnl|dasNov1|scaffold_16559 (9927-9782)
               

               
               17-127, gnl|echTel1|scaffold_323650 (4230-4085)
               

               
               17-127, gnl|galGal2|chr1 (63754703-63754833)
               

               
               17-127, gnl|hg17|chr12 (25151135-25151280)
               

               
               17-127, gnl|Hg17|chr12 (25151144-25151254)
               

               
               17-127, gnl|loxAfr1|scaffold_1796 (44316-44465)
               

               
               17-127, gnl|mm7|chr6 (145264557-145264690)
               

               
               17-127, gnl|Mm7|chr6 (145264566-145264676)
               

               
               17-127, gnl|monDom2|scaffold_31 (469355-469215)
               

               
               17-127, gnl|oryCun1|scaffold_210328 (9536-9397)
               

               
               17-127, gnl|panTro1|chrUn_random (51552209-51552354)
               

               
               17-127, gnl|rheMac2|chr11 (25384373-25384518)
               

               
               17-127, gnl|rn3|chr4 (183067039-183067165)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-127, gnl|bosTau2|chr5 (51803964-51803854)
               

               
               17-127, gnl|canFam2|chr27 (25386371-25386227)
               

               
               17-127, gnl|dasNov1|scaffold_16559 (9927-9782)
               

               
               17-127, gnl|echTel1|scaffold_323650 (4230-4085)
               

               
               17-127, gnl|galGal2|chr1 (63754703-63754833)
               

               
               17-127, gnl|hg17|chr12 (25151135-25151280)
               

               
               17-127, gnl|Hg17|chr12 (25151144-25151254)
               

               
               17-127, gnl|loxAfr1|scaffold_1796 (44316-44465)
               

               
               17-127, gnl|mm7|chr6 (145264557-145264690)
               

               
               17-127, gnl|Mm7|chr6 (145264566-145264676)
               

               
               17-127, gnl|monDom2|scaffold_31 (469355-469215)
               

               
               17-127, gnl|oryCun1|scaffold_210328 (9536-9397)
               

               
               17-127, gnl|panTro1|chrUn_random (51552209-51552354)
               

               
               17-127, gnl|rheMac2|chr11 (25384373-25384518)
               

               
               17-127, gnl|rn3|chr4 (183067039-183067165)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               thg (0.380373)
               

               
               lnt (0.284616)
               

               
               fty (0.17584)
               

               
               ill (0.175593)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               lnt (0.284616)
               

               
               fty (0.17584)
               

               
               ill (0.175593)

	17-127, gnl\|bosTau2\|chr5 (51803964-51803854)
	17-127, gnl\|canFam2\|chr27 (25386371-25386227)
	17-127, gnl\|dasNov1\|scaffold_16559 (9927-9782)
	17-127, gnl\|echTel1\|scaffold_323650 (4230-4085)
	17-127, gnl\|galGal2\|chr1 (63754703-63754833)
	17-127, gnl\|hg17\|chr12 (25151135-25151280)
	17-127, gnl\|Hg17\|chr12 (25151144-25151254)
	17-127, gnl\|loxAfr1\|scaffold_1796 (44316-44465)
	17-127, gnl\|mm7\|chr6 (145264557-145264690)
	17-127, gnl\|Mm7\|chr6 (145264566-145264676)
	17-127, gnl\|monDom2\|scaffold_31 (469355-469215)
	17-127, gnl\|oryCun1\|scaffold_210328 (9536-9397)
	17-127, gnl\|panTro1\|chrUn_random (51552209-51552354)
	17-127, gnl\|rheMac2\|chr11 (25384373-25384518)
	17-127, gnl\|rn3\|chr4 (183067039-183067165)