Non-Coding RNA Search

Ss1.1-rthg03_f23.5.5

Sequence:


               
               TATCAAAACTGAATTTGGTGAAAAGGATTCTTCTAAAGCATTTTGTGCACAGACGGACAA
ATACAGAGGAGACACAAGCCAGGCCGCAGATGATTCAACTTCAACCACTGGAAGCAGAAA
AAGTAGCACAGTGGAGACTGAACTAGCCAGTGAAGAAAAAAGCAGAGCTGCCGAGAGGAA
AAGAATCATTATCAAGATGGAACCGGAAGATATTCCTACAGATGAACTGAAAGACTTTAA
CATTATTAAAGTTACTGATAAAGACTGTAATGAGTCCACTGACAATGATGAATTAGAAGA
CGAACCTGAAGAGCCATTTTATAGATACTATGTTGAAGAAGATGTCAGTATTAAAAAGAG
TGGGAGGAAAACGCTAAAACCTCGGATGTCAATAAATGCCGATGAAAGAGGTGGTCTAGA
AAACATGAGGCCCCCAAACAACAGCAGTCCAGTACAAGAGGATACAGAAAATGCATCTTG
TGAGCTTTGTGGGCTTACGATAACCGAGGAGGACCTGTCGTCTCATTACTTAGCCAAACA
CATCGAAAATATCTGTGCATGTGGCAAGTGTGGACAAATCCTTGTGAAAGGAAGACAGCT
TCAGGAACATGCCCAGAGGTGTGGAGAGCCCCAAGATCTGACGATGAACGGGTTAGGAAA
TGCCGAGGAGAAAATGGACATGGAAGAGAATCCTGATGAGCAGTCTGAAATAAGGGATAT
GTTTGTTGAGATGTTGGATGATTTTAGGGACAATCATTTCCAGATAAACAGTATCCAAAA
AAAGCAGTTATTTAAACATTCTGCCTGTCCTTTTCGATGTCCTAATTGTGGCCAGCGTTT
TGAAACTGAAAATCTAGTGGTTGAACATATGTCTAGCTGCCTAGACCAAGACATGTTTAA
GAGTGCCATCATGGAAGAGAACGAAAGAGATCACAGACGAAAGCATTTTTGTAATCTGTG
CGGAAAAGGATTTTATCAGCGGTGTCACTTAAGAGAACACTATACTGTTCATACTAAGGA
AAAGCAGTTTGTTTGTCAGACATGTGGAAAGCAGTTTTTAAGAGAACGTCAGTTGCGACT
GCACAATGATATGCACAAAGGCATGGCCAGGTATGTCTGTTCCATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCAAAACTGAATTTGGTGAAAAGGATTCTTCTAAAGCATTTTGTGCACAGACGGACAA
ATACAGAGGAGACACAAGCCAGGCCGCAGATGATTCAACTTCAACCACTGGAAGCAGAAA
AAGTAGCACAGTGGAGACTGAACTAGCCAGTGAAGAAAAAAGCAGAGCTGCCGAGAGGAA
AAGAATCATTATCAAGATGGAACCGGAAGATATTCCTACAGATGAACTGAAAGACTTTAA
CATTATTAAAGTTACTGATAAAGACTGTAATGAGTCCACTGACAATGATGAATTAGAAGA
CGAACCTGAAGAGCCATTTTATAGATACTATGTTGAAGAAGATGTCAGTATTAAAAAGAG
TGGGAGGAAAACGCTAAAACCTCGGATGTCAATAAATGCCGATGAAAGAGGTGGTCTAGA
AAACATGAGGCCCCCAAACAACAGCAGTCCAGTACAAGAGGATACAGAAAATGCATCTTG
TGAGCTTTGTGGGCTTACGATAACCGAGGAGGACCTGTCGTCTCATTACTTAGCCAAACA
CATCGAAAATATCTGTGCATGTGGCAAGTGTGGACAAATCCTTGTGAAAGGAAGACAGCT
TCAGGAACATGCCCAGAGGTGTGGAGAGCCCCAAGATCTGACGATGAACGGGTTAGGAAA
TGCCGAGGAGAAAATGGACATGGAAGAGAATCCTGATGAGCAGTCTGAAATAAGGGATAT
GTTTGTTGAGATGTTGGATGATTTTAGGGACAATCATTTCCAGATAAACAGTATCCAAAA
AAAGCAGTTATTTAAACATTCTGCCTGTCCTTTTCGATGTCCTAATTGTGGCCAGCGTTT
TGAAACTGAAAATCTAGTGGTTGAACATATGTCTAGCTGCCTAGACCAAGACATGTTTAA
GAGTGCCATCATGGAAGAGAACGAAAGAGATCACAGACGAAAGCATTTTTGTAATCTGTG
CGGAAAAGGATTTTATCAGCGGTGTCACTTAAGAGAACACTATACTGTTCATACTAAGGA
AAAGCAGTTTGTTTGTCAGACATGTGGAAAGCAGTTTTTAAGAGAACGTCAGTTGCGACT
GCACAATGATATGCACAAAGGCATGGCCAGGTATGTCTGTTCCATTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8K321_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8K321_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.687222
               

               
               600-719, + strand, RNAz p=0.507951

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.687222
               

               
               600-719, + strand, RNAz p=0.507951

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1128, gnl|bosTau2|chr10 (51587558-51586431)
               

               
               1-1128, gnl|Hg17|chr14 (64058764-64059891)
               

               
               1-1128, gnl|Mm7|chr12 (74344219-74345343)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1128, gnl|bosTau2|chr10 (51587558-51586431)
               

               
               1-1128, gnl|Hg17|chr14 (64058764-64059891)
               

               
               1-1128, gnl|Mm7|chr12 (74344219-74345343)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pan (0.23596)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pan (0.23596)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

	80-199, - strand, RNAz p=0.687222
	600-719, + strand, RNAz p=0.507951

	1-1128, gnl\|bosTau2\|chr10 (51587558-51586431)
	1-1128, gnl\|Hg17\|chr14 (64058764-64059891)
	1-1128, gnl\|Mm7\|chr12 (74344219-74345343)

	pan (0.23596)
	tbr (0.154178)
	liv (0.146284)
	lnt (0.142308)
	thg (0.126791)
	cty (0.10408)