Non-Coding RNA Search

Ss1.1-rthg03_l1.5

Sequence:


               
               TGGTTTAGGGCCCTAAATTTGGATTTTGTTTGAAAACAGGCCAGTGGGAGGTACTGCAGA
AAAGTATCCCCCCCCACCACCAATTTTTAATCCCTCACTGCAGTTTAAAAATTAGAAAAG
AGACAGGCCCAGAGCAAGATGGCCTCACTTAAGCATTTGCTCCAGACCCCAAAGAAACCC
AGGTAAGGTGTGAAAGTTGGTGAGACGCATCTCCAGCTAATACCAGAGTTGCCCATTTTA
TATGTGAAAACATTGAACCTGATTCTTTGGCGGGTAAATTTTTCCAGAAAGAATTTAGCA
GTGCATTCAGAATTATATAATTCTTTTATATGAGTTTCTGTAGCTTAATATGATGTTTCA
GTGCTTATTATTAGTTGTGCAATAATGGTTATAGCCTATTTCTAAATAATTTAAATGCAG
TTCCCCTGTTTTATTGTTCAAGAGTTAATTATTTATCTTGCTTTAGTAGTTTTTGTAGGA
GTTATTTCGTTGCTATGTTCTGGTGAGTTACGCCCATTTTATTATTTATTTAGAAAAATA
GTATGTTTGTAACGACTTATTTGGTGGCAGTATATTTTGCTGCAAGAAATAAAGAGGATA
TGATAGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTAGGGCCCTAAATTTGGATTTTGTTTGAAAACAGGCCAGTGGGAGGTACTGCAGA
AAAGTATCCCCCCCCACCACCAATTTTTAATCCCTCACTGCAGTTTAAAAATTAGAAAAG
AGACAGGCCCAGAGCAAGATGGCCTCACTTAAGCATTTGCTCCAGACCCCAAAGAAACCC
AGGTAAGGTGTGAAAGTTGGTGAGACGCATCTCCAGCTAATACCAGAGTTGCCCATTTTA
TATGTGAAAACATTGAACCTGATTCTTTGGCGGGTAAATTTTTCCAGAAAGAATTTAGCA
GTGCATTCAGAATTATATAATTCTTTTATATGAGTTTCTGTAGCTTAATATGATGTTTCA
GTGCTTATTATTAGTTGTGCAATAATGGTTATAGCCTATTTCTAAATAATTTAAATGCAG
TTCCCCTGTTTTATTGTTCAAGAGTTAATTATTTATCTTGCTTTAGTAGTTTTTGTAGGA
GTTATTTCGTTGCTATGTTCTGGTGAGTTACGCCCATTTTATTATTTATTTAGAAAAATA
GTATGTTTGTAACGACTTATTTGGTGGCAGTATATTTTGCTGCAAGAAATAAAGAGGATA
TGATAGAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-608, gnl|bosTau2|chr9 (55661643-55662253)
               

               
               1-608, gnl|Hg17|chr6 (158899707-158900317)
               

               
               1-608, gnl|Mm7|chr17 (6183436-6184058)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-608, gnl|bosTau2|chr9 (55661643-55662253)
               

               
               1-608, gnl|Hg17|chr6 (158899707-158900317)
               

               
               1-608, gnl|Mm7|chr17 (6183436-6184058)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	1-608, gnl\|bosTau2\|chr9 (55661643-55662253)
	1-608, gnl\|Hg17\|chr6 (158899707-158900317)
	1-608, gnl\|Mm7\|chr17 (6183436-6184058)

	cbe (0.239234)
	sto (0.179824)
	gul (0.177588)
	eye (0.170503)
	tbr (0.154178)
	isp (0.150376)
	ova (0.129132)
	thg (0.126791)
	ecc (0.115035)
	spc (0.113366)