Non-Coding RNA Search

Ss1.1-rthg05_f6.5

Sequence:


               
               TGCCAAGCCCTCAAAAATGCATGCCTCCTGTGCCAAGAGGCCTCACTGTCATTCAGCAGG
AGCTGGAAGTGCTAAGCTCTCAATATGCAAACATTGTGAATCTCAACAAACAAGTTTATG
GACCATTTTATGCAAATATACTCCGAAAGCTGCTCTTCAGTGAGGAAGCCACGGGGAAGG
CGGATGCTTCATCGTCTACTAACTAAAGAGGAACTGACATTGGATAAGAGATTGGAAACC
CAGCACTAATGTTACTGAATAAATGATGCAAAGTAAGGATAATTGTATTTGAAATGTATA
ATTCAATTTTATTAATGTGTAGTAGAAACTTACACAGTAGGTTCTCAAATTCTACAACAT
ACCAAAATCACATTTTGTAATACCAATTGTCAGTATTTGTCTAGAATTTAAACATATTAA
ATACATTTTAAAGCTACATACAATTTTTCGATAAAACCTCCCTTGTTCGTTTAGTGAAAA
TAGGCACAAACTCCTTCTAAAATTTTATTCTAGAGGGTAGATTCTTCTTGCAACTTATCC
TGCCCTCTGAGGGAAACAATTTTTGCACACATCTCTTTGTAAATGTCCTGGCATTTCTCA
GGCCATTGGTAAGGTTTATATAAGATTTTAATATTTTTACATAGGCCGGAGTGGTTTGAA
TTGGTTTCCTTGTAAGAAGAGAAGTTGACAAAATGAGATCCTTATTTTCGGTGAAATTCC
CATCTGAAAAAGAAACAGTAGAACTTTGGATTTTTTTTTTTTTTTTTAACCATGTAATGT
GCTAGCAAATGCCTTCTGTGCCGATTAAATTCTTGCCCTGCTGTGACCAAGATGTTCTTC
TAAGTATCATCATCCTTTGCCATTCTTGTGCATTAGCCTTTGCCAGGCTGGCACCAGTCA
TCAAGATTCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCAAGCCCTCAAAAATGCATGCCTCCTGTGCCAAGAGGCCTCACTGTCATTCAGCAGG
AGCTGGAAGTGCTAAGCTCTCAATATGCAAACATTGTGAATCTCAACAAACAAGTTTATG
GACCATTTTATGCAAATATACTCCGAAAGCTGCTCTTCAGTGAGGAAGCCACGGGGAAGG
CGGATGCTTCATCGTCTACTAACTAAAGAGGAACTGACATTGGATAAGAGATTGGAAACC
CAGCACTAATGTTACTGAATAAATGATGCAAAGTAAGGATAATTGTATTTGAAATGTATA
ATTCAATTTTATTAATGTGTAGTAGAAACTTACACAGTAGGTTCTCAAATTCTACAACAT
ACCAAAATCACATTTTGTAATACCAATTGTCAGTATTTGTCTAGAATTTAAACATATTAA
ATACATTTTAAAGCTACATACAATTTTTCGATAAAACCTCCCTTGTTCGTTTAGTGAAAA
TAGGCACAAACTCCTTCTAAAATTTTATTCTAGAGGGTAGATTCTTCTTGCAACTTATCC
TGCCCTCTGAGGGAAACAATTTTTGCACACATCTCTTTGTAAATGTCCTGGCATTTCTCA
GGCCATTGGTAAGGTTTATATAAGATTTTAATATTTTTACATAGGCCGGAGTGGTTTGAA
TTGGTTTCCTTGTAAGAAGAGAAGTTGACAAAATGAGATCCTTATTTTCGGTGAAATTCC
CATCTGAAAAAGAAACAGTAGAACTTTGGATTTTTTTTTTTTTTTTTAACCATGTAATGT
GCTAGCAAATGCCTTCTGTGCCGATTAAATTCTTGCCCTGCTGTGACCAAGATGTTCTTC
TAAGTATCATCATCCTTTGCCATTCTTGTGCATTAGCCTTTGCCAGGCTGGCACCAGTCA
TCAAGATTCGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-101, + strand, RNAz p=0.964077

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-101, + strand, RNAz p=0.964077

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-252, gnl|bosTau2|chr5 (42186852-42187103)
               

               
               1-252, gnl|canFam2|chr10 (35444601-35444381)
               

               
               1-252, gnl|echTel1|scaffold_290657 (48001-48222)
               

               
               1-252, gnl|galGal2|chr1 (50596738-50596531)
               

               
               1-252, gnl|hg17|chr12 (105242514-105242734)
               

               
               1-252, gnl|Hg17|chr12 (105242570-105242821)
               

               
               1-252, gnl|mm7|chr10 (84154829-84155049)
               

               
               1-252, gnl|Mm7|chr10 (84154885-84155118)
               

               
               1-252, gnl|monDom2|scaffold_34 (7010681-7010468)
               

               
               1-252, gnl|oryCun1|scaffold_172546 (24018-23797)
               

               
               1-252, gnl|panTro1|chr10 (107754400-107754620)
               

               
               1-252, gnl|rheMac2|chr11 (107441634-107441855)
               

               
               1-252, gnl|rn3|chr7 (21300602-21300383)
               

               
               1-252, gnl|xenTro1|scaffold_230 (901804-902024)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-252, gnl|bosTau2|chr5 (42186852-42187103)
               

               
               1-252, gnl|canFam2|chr10 (35444601-35444381)
               

               
               1-252, gnl|echTel1|scaffold_290657 (48001-48222)
               

               
               1-252, gnl|galGal2|chr1 (50596738-50596531)
               

               
               1-252, gnl|hg17|chr12 (105242514-105242734)
               

               
               1-252, gnl|Hg17|chr12 (105242570-105242821)
               

               
               1-252, gnl|mm7|chr10 (84154829-84155049)
               

               
               1-252, gnl|Mm7|chr10 (84154885-84155118)
               

               
               1-252, gnl|monDom2|scaffold_34 (7010681-7010468)
               

               
               1-252, gnl|oryCun1|scaffold_172546 (24018-23797)
               

               
               1-252, gnl|panTro1|chr10 (107754400-107754620)
               

               
               1-252, gnl|rheMac2|chr11 (107441634-107441855)
               

               
               1-252, gnl|rn3|chr7 (21300602-21300383)
               

               
               1-252, gnl|xenTro1|scaffold_230 (901804-902024)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)

	1-252, gnl\|bosTau2\|chr5 (42186852-42187103)
	1-252, gnl\|canFam2\|chr10 (35444601-35444381)
	1-252, gnl\|echTel1\|scaffold_290657 (48001-48222)
	1-252, gnl\|galGal2\|chr1 (50596738-50596531)
	1-252, gnl\|hg17\|chr12 (105242514-105242734)
	1-252, gnl\|Hg17\|chr12 (105242570-105242821)
	1-252, gnl\|mm7\|chr10 (84154829-84155049)
	1-252, gnl\|Mm7\|chr10 (84154885-84155118)
	1-252, gnl\|monDom2\|scaffold_34 (7010681-7010468)
	1-252, gnl\|oryCun1\|scaffold_172546 (24018-23797)
	1-252, gnl\|panTro1\|chr10 (107754400-107754620)
	1-252, gnl\|rheMac2\|chr11 (107441634-107441855)
	1-252, gnl\|rn3\|chr7 (21300602-21300383)
	1-252, gnl\|xenTro1\|scaffold_230 (901804-902024)