Ss1.1-rthg05_g5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTTTCCAAAATGCCAGCGTTCCTTCGCTCTGCCCTTCATATTTTGTTTTCTGAAGATT CATCAAAACTCTTTGTGGCATCAAGTCAAGGTTCTCTACATATCATTCGGCTGCTGGAGG GAAGCTTCAAACACCTGCATACTTTCCAGCCTCAGTCAGGGACAGTGGAATCCATGTGTC TTTTGGCAGTCAGTCCAGATGGAAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCC ATGTGTACAACGTGAAACATCTAAAGCTTCACTGCACTGTGCCTGCTTACAATTTCCCCG TGACTGCTCTGGCCATAGCCCCCAAAACCAACAACCTTGTCATTGCTCTATACAGAATGG AGCCGGACCATCCAGAAGCAGGGCTTTCATCATCTTTGGCTCCAAAGGGATACTCCCATC ACACATATCAGTTTTCATCCCAAGAGACCAATGCACATCCTTCTCCACGATGCCTACATG TTCTGCATCATCGACAAGTCATTGCCTCTTCCAAATGACAAAACCTTACTCTACAATCCG CTGCCTCCCACAAATGAATCAGATGTCATCAGGAGGCGCACAGCTCATGCCTTTAAAATT TCTAAGATATATAAGCCTCTACTCTTCATGGATCTTTTGGATGAAAAGACACTGGTGGCG GTAGAACGGCCTCTGGATGACATCATTGCTCAGCTCCCACCACCCATCAAAAAGAAGAAA TTTGGGACTTAAAACAAGGCACTGTCTGTGTCCTTTCTTAAACTGTCTACCCTGTTTGTT TTCACCAATCATGATAATAAAACAAAGTTATTCTTTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTTTCCAAAATGCCAGCGTTCCTTCGCTCTGCCCTTCATATTTTGTTTTCTGAAGATT CATCAAAACTCTTTGTGGCATCAAGTCAAGGTTCTCTACATATCATTCGGCTGCTGGAGG GAAGCTTCAAACACCTGCATACTTTCCAGCCTCAGTCAGGGACAGTGGAATCCATGTGTC TTTTGGCAGTCAGTCCAGATGGAAATTGGCTAGCTGCATCAGGTACCAGTGCTGGAGTCC ATGTGTACAACGTGAAACATCTAAAGCTTCACTGCACTGTGCCTGCTTACAATTTCCCCG TGACTGCTCTGGCCATAGCCCCCAAAACCAACAACCTTGTCATTGCTCTATACAGAATGG AGCCGGACCATCCAGAAGCAGGGCTTTCATCATCTTTGGCTCCAAAGGGATACTCCCATC ACACATATCAGTTTTCATCCCAAGAGACCAATGCACATCCTTCTCCACGATGCCTACATG TTCTGCATCATCGACAAGTCATTGCCTCTTCCAAATGACAAAACCTTACTCTACAATCCG CTGCCTCCCACAAATGAATCAGATGTCATCAGGAGGCGCACAGCTCATGCCTTTAAAATT TCTAAGATATATAAGCCTCTACTCTTCATGGATCTTTTGGATGAAAAGACACTGGTGGCG GTAGAACGGCCTCTGGATGACATCATTGCTCAGCTCCCACCACCCATCAAAAAGAAGAAA TTTGGGACTTAAAACAAGGCACTGTCTGTGTCCTTTCTTAAACTGTCTACCCTGTTTGTT TTCACCAATCATGATAATAAAACAAAGTTATTCTTTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 387-504, - strand, RNAz p=0.600926 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 387-504, - strand, RNAz p=0.600926 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 2-164, gnl|bosTau2|chr18 (13969663-13969500) | |
| 2-164, gnl|canFam2|chr5 (83492085-83491904) | |
| 2-164, gnl|danRer3|chr23 (47244658-47244480) | |
| 2-164, gnl|dasNov1|scaffold_15984 (4739-4896) | |
| 2-164, gnl|echTel1|scaffold_314479 (106777-106600) | |
| 2-164, gnl|galGal2|chr11_random (111840-112006) | |
| 2-164, gnl|hg17|chr16 (67748465-67748645) | |
| 2-164, gnl|Hg17|chr16 (67748487-67748650) | |
| 2-164, gnl|mm7|chr8 (105513462-105513642) | |
| 2-164, gnl|Mm7|chr8 (105513484-105513689) | |
| 2-164, gnl|monDom2|scaffold_23 (5099138-5098958) | |
| 2-164, gnl|panTro1|chr18 (62077944-62078124) | |
| 2-164, gnl|rheMac2|chr20 (67533901-67534081) | |
| 2-164, gnl|rn3|chr19 (36766350-36766531) | |
| 2-164, gnl|xenTro1|scaffold_132 (1478028-1477847) | |
| 349-504, gnl|bosTau2|chr18 (13963123-13962968) | |
| 349-504, gnl|Hg17|chr16 (67756775-67756930) | |
| 349-504, gnl|Mm7|chr8 (105518787-105518942) | |
| 614-817, gnl|bosTau2|chr18 (13960476-13960278) | |
| 614-817, gnl|canFam2|chr5 (83482360-83482074) | |
| 614-817, gnl|danRer3|chr23 (47239700-47239360) | |
| 614-817, gnl|dasNov1|scaffold_176693 (547-255) | |
| 614-817, gnl|echTel1|scaffold_314479 (100032-99744) | |
| 614-817, gnl|hg17|chr16 (67760221-67760514) | |
| 614-817, gnl|Hg17|chr16 (67760223-67760425) | |
| 614-817, gnl|loxAfr1|scaffold_19789 (58377-58087) | |
| 614-817, gnl|mm7|chr8 (105522998-105523300) | |
| 614-817, gnl|Mm7|chr8 (105523000-105523225) | |
| 614-817, gnl|monDom2|scaffold_23 (5091904-5091562) | |
| 614-817, gnl|oryCun1|scaffold_188109 (13457-13166) | |
| 614-817, gnl|panTro1|chr18 (62089769-62090062) | |
| 614-817, gnl|rheMac2|chr20 (67545186-67545479) | |
| 614-817, gnl|rn3|chr19 (36774936-36775236) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-164, gnl|bosTau2|chr18 (13969663-13969500) | |
| 2-164, gnl|canFam2|chr5 (83492085-83491904) | |
| 2-164, gnl|danRer3|chr23 (47244658-47244480) | |
| 2-164, gnl|dasNov1|scaffold_15984 (4739-4896) | |
| 2-164, gnl|echTel1|scaffold_314479 (106777-106600) | |
| 2-164, gnl|galGal2|chr11_random (111840-112006) | |
| 2-164, gnl|hg17|chr16 (67748465-67748645) | |
| 2-164, gnl|Hg17|chr16 (67748487-67748650) | |
| 2-164, gnl|mm7|chr8 (105513462-105513642) | |
| 2-164, gnl|Mm7|chr8 (105513484-105513689) | |
| 2-164, gnl|monDom2|scaffold_23 (5099138-5098958) | |
| 2-164, gnl|panTro1|chr18 (62077944-62078124) | |
| 2-164, gnl|rheMac2|chr20 (67533901-67534081) | |
| 2-164, gnl|rn3|chr19 (36766350-36766531) | |
| 2-164, gnl|xenTro1|scaffold_132 (1478028-1477847) | |
| 349-504, gnl|bosTau2|chr18 (13963123-13962968) | |
| 349-504, gnl|Hg17|chr16 (67756775-67756930) | |
| 349-504, gnl|Mm7|chr8 (105518787-105518942) | |
| 614-817, gnl|bosTau2|chr18 (13960476-13960278) | |
| 614-817, gnl|canFam2|chr5 (83482360-83482074) | |
| 614-817, gnl|danRer3|chr23 (47239700-47239360) | |
| 614-817, gnl|dasNov1|scaffold_176693 (547-255) | |
| 614-817, gnl|echTel1|scaffold_314479 (100032-99744) | |
| 614-817, gnl|hg17|chr16 (67760221-67760514) | |
| 614-817, gnl|Hg17|chr16 (67760223-67760425) | |
| 614-817, gnl|loxAfr1|scaffold_19789 (58377-58087) | |
| 614-817, gnl|mm7|chr8 (105522998-105523300) | |
| 614-817, gnl|Mm7|chr8 (105523000-105523225) | |
| 614-817, gnl|monDom2|scaffold_23 (5091904-5091562) | |
| 614-817, gnl|oryCun1|scaffold_188109 (13457-13166) | |
| 614-817, gnl|panTro1|chr18 (62089769-62090062) | |
| 614-817, gnl|rheMac2|chr20 (67545186-67545479) | |
| 614-817, gnl|rn3|chr19 (36774936-36775236) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| pro (0.512033) | |
| sin (0.174948) | |
| csp (0.161186) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| sin (0.174948) | |
| csp (0.161186) | |
| ova (0.129132) | |
| thg (0.126791) | |
| eep (0.122564) |