Ss1.1-rthg05_j18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGATCCAGATCCAAAGGCTCCTGACTGCCAGACGGTGCTGCTCCAGTCTGCATGCATCG CCCCCTGCACTGACGGAGCCACAGACTCACATCCTGACCTGCGCACCAAGCAGGCACCCT AGACACACTGTGCACAGACCCAAGTCCTTATCACCCAAGCAGCTCAGCTCGGTTTACAAA CCCATCTCACATTCTCTATTTGACCCACATGAAAATCCTACAAGGCTGATAGTGACGGGA TCAAAATTAGCATCTGTATTTTATAGAGATGCAAATGGAACTCAGAGAGGTTCAAATGAT TGCCCAAGATCACCAGCGAGTGCGTGGACTGGCCCAGGCCTCCTGATTGCTAGTTCCACT GCTGTCTCTTGAACACAGGGACAAATACCACACAGATCTCTGCAGCTGGCTAGTCACAGA TGCCTGGTACATGTTTTGGATTCACAGGAGCCTTCCGCCACAGGGAGGTCGCCTCAAAGG GTTCAGGAACATGCAGGAGGGCCTCTCTGGCTGGAATCCCTCCTTCATCACCTGCTGGCA GCAGAATCCTGTTACCAGAGAACAAAACCTTCAGTTCTCCGAATCAGGGCACAGGCCCTG TGGGAGAGAGTGTCCAGTGACCTGCCACTCACCCTGTGCAGAACTTTCTGGAAGCTTGCC TCTTCCAGGAAGAACACCCAGCTGCCACCAGGGCTCCTCACGGCTTGCTTGGTGTTCCTG CCCCCTCCCCACCCCTGCCTCCCTGAGCTGACAGGAAAATACAACAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGATCCAGATCCAAAGGCTCCTGACTGCCAGACGGTGCTGCTCCAGTCTGCATGCATCG CCCCCTGCACTGACGGAGCCACAGACTCACATCCTGACCTGCGCACCAAGCAGGCACCCT AGACACACTGTGCACAGACCCAAGTCCTTATCACCCAAGCAGCTCAGCTCGGTTTACAAA CCCATCTCACATTCTCTATTTGACCCACATGAAAATCCTACAAGGCTGATAGTGACGGGA TCAAAATTAGCATCTGTATTTTATAGAGATGCAAATGGAACTCAGAGAGGTTCAAATGAT TGCCCAAGATCACCAGCGAGTGCGTGGACTGGCCCAGGCCTCCTGATTGCTAGTTCCACT GCTGTCTCTTGAACACAGGGACAAATACCACACAGATCTCTGCAGCTGGCTAGTCACAGA TGCCTGGTACATGTTTTGGATTCACAGGAGCCTTCCGCCACAGGGAGGTCGCCTCAAAGG GTTCAGGAACATGCAGGAGGGCCTCTCTGGCTGGAATCCCTCCTTCATCACCTGCTGGCA GCAGAATCCTGTTACCAGAGAACAAAACCTTCAGTTCTCCGAATCAGGGCACAGGCCCTG TGGGAGAGAGTGTCCAGTGACCTGCCACTCACCCTGTGCAGAACTTTCTGGAAGCTTGCC TCTTCCAGGAAGAACACCCAGCTGCCACCAGGGCTCCTCACGGCTTGCTTGGTGTTCCTG CCCCCTCCCCACCCCTGCCTCCCTGAGCTGACAGGAAAATACAACAGA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 527-633, + strand, RNAz p=0.700848 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 527-633, + strand, RNAz p=0.700848 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_000616, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-182, gnl|bosTau2|chr5 (61170848-61171031) | |
| 1-182, gnl|canFam2|chr27 (41232193-41231915) | |
| 1-182, gnl|dasNov1|scaffold_5223 (11606-11856) | |
| 1-182, gnl|echTel1|scaffold_319441 (92502-92300) | |
| 1-182, gnl|hg17|chr12 (6799028-6799331) | |
| 1-182, gnl|mm7|chr6 (124892358-124892067) | |
| 1-182, gnl|Mm7|chr6 (124892190-124892027) | |
| 1-182, gnl|oryCun1|scaffold_191519 (11035-11317) | |
| 1-182, gnl|panTro1|chr10 (7335657-7335960) | |
| 1-182, gnl|rheMac2|chr11 (7000546-7000849) | |
| 1-182, gnl|rn3|chr4 (161233498-161233220) | |
| 186-654, gnl|bosTau2|chr5 (61171247-61171713) | |
| 186-654, gnl|Hg17|chr12 (6799366-6799851) | |
| 186-654, gnl|Mm7|chr6 (124891829-124891394) | |
| 656-768, gnl|bosTau2|chr5 (61172007-61172118) | |
| 656-768, gnl|canFam2|chr27 (41231154-41230965) | |
| 656-768, gnl|dasNov1|scaffold_5223 (12582-12764) | |
| 656-768, gnl|hg17|chr12 (6800014-6800197) | |
| 656-768, gnl|Hg17|chr12 (6800108-6800221) | |
| 656-768, gnl|mm7|chr6 (124891288-124891121) | |
| 656-768, gnl|Mm7|chr6 (124891201-124891100) | |
| 656-768, gnl|monDom2|scaffold_31 (15279355-15279477) | |
| 656-768, gnl|oryCun1|scaffold_191519 (11901-12091) | |
| 656-768, gnl|panTro1|chr10 (7336644-7336827) | |
| 656-768, gnl|rheMac2|chr11 (7001541-7001722) | |
| 656-768, gnl|rn3|chr4 (161232480-161232296) | |
| 656-768, gnl|xenTro1|scaffold_319 (1028278-1028092) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-182, gnl|bosTau2|chr5 (61170848-61171031) | |
| 1-182, gnl|canFam2|chr27 (41232193-41231915) | |
| 1-182, gnl|dasNov1|scaffold_5223 (11606-11856) | |
| 1-182, gnl|echTel1|scaffold_319441 (92502-92300) | |
| 1-182, gnl|hg17|chr12 (6799028-6799331) | |
| 1-182, gnl|mm7|chr6 (124892358-124892067) | |
| 1-182, gnl|Mm7|chr6 (124892190-124892027) | |
| 1-182, gnl|oryCun1|scaffold_191519 (11035-11317) | |
| 1-182, gnl|panTro1|chr10 (7335657-7335960) | |
| 1-182, gnl|rheMac2|chr11 (7000546-7000849) | |
| 1-182, gnl|rn3|chr4 (161233498-161233220) | |
| 186-654, gnl|bosTau2|chr5 (61171247-61171713) | |
| 186-654, gnl|Hg17|chr12 (6799366-6799851) | |
| 186-654, gnl|Mm7|chr6 (124891829-124891394) | |
| 656-768, gnl|bosTau2|chr5 (61172007-61172118) | |
| 656-768, gnl|canFam2|chr27 (41231154-41230965) | |
| 656-768, gnl|dasNov1|scaffold_5223 (12582-12764) | |
| 656-768, gnl|hg17|chr12 (6800014-6800197) | |
| 656-768, gnl|Hg17|chr12 (6800108-6800221) | |
| 656-768, gnl|mm7|chr6 (124891288-124891121) | |
| 656-768, gnl|Mm7|chr6 (124891201-124891100) | |
| 656-768, gnl|monDom2|scaffold_31 (15279355-15279477) | |
| 656-768, gnl|oryCun1|scaffold_191519 (11901-12091) | |
| 656-768, gnl|panTro1|chr10 (7336644-7336827) | |
| 656-768, gnl|rheMac2|chr11 (7001541-7001722) | |
| 656-768, gnl|rn3|chr4 (161232480-161232296) | |
| 656-768, gnl|xenTro1|scaffold_319 (1028278-1028092) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cag (0.302389) | |
| fty (0.17584) | |
| ill (0.175593) | |
| csp (0.161186) | |
| thg (0.126791) | |
| cly (0.120642) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| fty (0.17584) | |
| ill (0.175593) | |
| csp (0.161186) | |
| thg (0.126791) | |
| cly (0.120642) |