Non-Coding RNA Search

Ss1.1-rthg05_p10.5

Sequence:


               
               CAAATGAGAATTCACAGTGATATATATTTAATTTCTAGGTACAACAGAACTCCTAAGTTG
AAGATGAATGAAGGTCATCTTCAGATAAATGTTTTCTAAAATTTGCCATAGAGGATGGCT
ATGAAAAAAACCACTAGGAGGACAACTGCATGTTACAAGGTACCAAAGGTTATAATGTTA
AATTGTGTGCTTTTTTATGTTTGTGGTATTATTCCTGAAGAACAGTACCAAAAATGTTTA
ATAACTGGCATAATGATGACTCAAATTACTTTTTGCCGTTTACCCAGCTGAGGGTGACTT
TGAAGAAATAATTTCAAGACTGAGATGCCAGTAACCCATGTTATGTGAATTACTTAAATA
TAATGCAGTTCTTATTAAAATAGGTGAAATGTTCTTTTCAACATACAGGTACCTGCAGGT
GAATGTTCAAGTCCTTAGCATTAGTGTAGAAATACTTCATTGCCTCAAGTAAGTACATAA
GATTTGTCAAATAACCAAATTTATTGATAACTTGAAACTATCTGATAAAACTCCAAAGGG
CTGGGGCCATTTCCTTTTAAAAATGCCTTTGTGAGTCAGCTGTATGATTTTCTCTGTTTT
GAGAATGGAATGATTTTTACTGTTTCTGATTTTTTTTTTTCCAGAGATGTGGCATACAGC
ATTTCGGAAGGAAAAATGAACTGGTCAAGAAGACATGAAGCAAATGATGAAAAATTAATA
ATTTTATTTAACATTGATCATCTCACAATAAATTCTGTAGAAAAATACAAATTCAAATTA
TTAATTGCGGGACAATAAAGTCTGTTATCTTTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATGAGAATTCACAGTGATATATATTTAATTTCTAGGTACAACAGAACTCCTAAGTTG
AAGATGAATGAAGGTCATCTTCAGATAAATGTTTTCTAAAATTTGCCATAGAGGATGGCT
ATGAAAAAAACCACTAGGAGGACAACTGCATGTTACAAGGTACCAAAGGTTATAATGTTA
AATTGTGTGCTTTTTTATGTTTGTGGTATTATTCCTGAAGAACAGTACCAAAAATGTTTA
ATAACTGGCATAATGATGACTCAAATTACTTTTTGCCGTTTACCCAGCTGAGGGTGACTT
TGAAGAAATAATTTCAAGACTGAGATGCCAGTAACCCATGTTATGTGAATTACTTAAATA
TAATGCAGTTCTTATTAAAATAGGTGAAATGTTCTTTTCAACATACAGGTACCTGCAGGT
GAATGTTCAAGTCCTTAGCATTAGTGTAGAAATACTTCATTGCCTCAAGTAAGTACATAA
GATTTGTCAAATAACCAAATTTATTGATAACTTGAAACTATCTGATAAAACTCCAAAGGG
CTGGGGCCATTTCCTTTTAAAAATGCCTTTGTGAGTCAGCTGTATGATTTTCTCTGTTTT
GAGAATGGAATGATTTTTACTGTTTCTGATTTTTTTTTTTCCAGAGATGTGGCATACAGC
ATTTCGGAAGGAAAAATGAACTGGTCAAGAAGACATGAAGCAAATGATGAAAAATTAATA
ATTTTATTTAACATTGATCATCTCACAATAAATTCTGTAGAAAAATACAAATTCAAATTA
TTAATTGCGGGACAATAAAGTCTGTTATCTTTAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-342, - strand, RNAz p=0.713274

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-342, - strand, RNAz p=0.713274

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-815, gnl|bosTau2|chr14 (18174638-18175452)
               

               
               1-815, gnl|Hg17|chr8 (67997550-67996728)
               

               
               1-815, gnl|Mm7|chr1 (10085478-10084726)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-815, gnl|bosTau2|chr14 (18174638-18175452)
               

               
               1-815, gnl|Hg17|chr8 (67997550-67996728)
               

               
               1-815, gnl|Mm7|chr1 (10085478-10084726)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               thg (0.253582)
               

               
               rec (0.17307)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               rec (0.17307)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	1-815, gnl\|bosTau2\|chr14 (18174638-18175452)
	1-815, gnl\|Hg17\|chr8 (67997550-67996728)
	1-815, gnl\|Mm7\|chr1 (10085478-10084726)

	thg (0.253582)
	rec (0.17307)
	kid (0.129735)
	ova (0.129132)
	tra (0.123092)