Non-Coding RNA Search

Ss1.1-rthg06_n20.5

Sequence:


               
               AAAAACAAAAAAAAAAGAAAAGGAAAAAAAAAGTTCCTGCAAAATTGCAGATCCACAAAA
GCTGGTTTTATAGAGGATCATGAACTATGCACAAACTGGTTCCAGACTTTTTTCTCAAGT
TCGGTAGTGTATTTAGCTAAACAGACCTTCCTCAGAGTAACTGCATCTCATTGCCTATTC
ACGCACTCTGTATATTTGGTGTCCACGTCTCTGCAAACGTACATCAAATATAGGTGCGTG
CGTGTGTGCGTGCACCCAGCTTCCCAAGCTGCATTTAGCATCGAGTTGTAGAAAACTCCT
GATATTTTTAAATTGGGGATGGAAGTAAAGAATCTGTTTGTTTGTTTCTGTTTTTTTTGT
TGTTGTTGTTGTTGTTGTTGGGGTTTTGTTTTGTTTTGACCTTTTATTTTGAATTAAAGA
CGTCTGTAACTCTGAGATTAAAAACCGAGTTTGTGGCTTTTAATGTTTTTCCTCATAGAA
TGTGATTGTTGAAGAAAATGCACCGACAGTTGCTTTCAAAAGTACAACGCTTTGTTGAAT
CTTAATAAATTGCAATTTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAACAAAAAAAAAAGAAAAGGAAAAAAAAAGTTCCTGCAAAATTGCAGATCCACAAAA
GCTGGTTTTATAGAGGATCATGAACTATGCACAAACTGGTTCCAGACTTTTTTCTCAAGT
TCGGTAGTGTATTTAGCTAAACAGACCTTCCTCAGAGTAACTGCATCTCATTGCCTATTC
ACGCACTCTGTATATTTGGTGTCCACGTCTCTGCAAACGTACATCAAATATAGGTGCGTG
CGTGTGTGCGTGCACCCAGCTTCCCAAGCTGCATTTAGCATCGAGTTGTAGAAAACTCCT
GATATTTTTAAATTGGGGATGGAAGTAAAGAATCTGTTTGTTTGTTTCTGTTTTTTTTGT
TGTTGTTGTTGTTGTTGTTGGGGTTTTGTTTTGTTTTGACCTTTTATTTTGAATTAAAGA
CGTCTGTAACTCTGAGATTAAAAACCGAGTTTGTGGCTTTTAATGTTTTTCCTCATAGAA
TGTGATTGTTGAAGAAAATGCACCGACAGTTGCTTTCAAAAGTACAACGCTTTGTTGAAT
CTTAATAAATTGCAATTTTTTTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-118, - strand, RNAz p=0.661285
               

               
               159-299, + strand, RNAz p=0.999517

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.661285
               

               
               159-299, + strand, RNAz p=0.999517

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               182-246, + strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               182-246, + strand, RNAmicro p=1

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-562, gnl|bosTau2|chr19 (47924899-47924314)
               

               
               1-562, gnl|Hg17|chr17 (73614554-73615122)
               

               
               1-562, gnl|Mm7|chr11 (117871980-117872464)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-562, gnl|bosTau2|chr19 (47924899-47924314)
               

               
               1-562, gnl|Hg17|chr17 (73614554-73615122)
               

               
               1-562, gnl|Mm7|chr11 (117871980-117872464)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               ova (0.258264)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spc (0.113366)

	1-118, - strand, RNAz p=0.661285
	159-299, + strand, RNAz p=0.999517

	1-562, gnl\|bosTau2\|chr19 (47924899-47924314)
	1-562, gnl\|Hg17\|chr17 (73614554-73615122)
	1-562, gnl\|Mm7\|chr11 (117871980-117872464)

	pro (0.512033)
	thg (0.507164)
	ova (0.258264)
	ece (0.229305)
	fcc (0.197785)
	sin (0.174948)
	fco (0.157208)
	fat (0.147427)
	ski (0.146735)
	spc (0.113366)