Non-Coding RNA Search

Ss1.1-rthg06_n24.5

Sequence:


               
               TAGGAGGACAGTCACTCTAACTGCAAAGTTAATAAGCTGAATTAAAAAGTTGCTTTTCCA
ATAGGATTTAAAATGACTTTGGCTATACATCAGAAGCAGTGTATTTACAATTTCCAGTTA
TTTCAGTGCTCAATCAGTGCTTCTTTTCCCCACTTCAGTCTGCTATGTCAAAAAACTGCA
TCAAGCTTTTGTGTGAAGATCCCGTTTTTGCAGAGTATATAAAATGTATCCTGATGGATG
AAAGAACCTTCCTAAACAACAACATCGTCTACACATTCATGACACATTTTCTTCTAAAGG
TATGTCCCAAGTTGGAAACCAGGTATGAGTTACTTCCAGTTAGTTATGATTGTGTTTTCA
TTGTGTTGGTCTCGTGGAGACTTTTTTTTTTTTTAAATCGTCTTTTTCAGGTTCAAGGTC
AAGTGTTTTCTGAAGCAAACTGTGCCAATTTGATCAGTACTCTTATTACGAACTTGATAA
ATCAGTATCAGAACCTGCAATCTGACTTTACCAACCGAGTTGAGATTTCCAAAGCAAGTG
CTTCTTTAAATGGGGTAAGAAAAAAAATAAAAATAAATAAATGGGGTAAGAATTATGTAA
GGGAATAGTCACATACTTCAGAACTTTTCCTTAAATAACTCTAAATTTGACCTTAGTATA
TGCTTTTACTTTATACATAACTTCATTATTCAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGAGGACAGTCACTCTAACTGCAAAGTTAATAAGCTGAATTAAAAAGTTGCTTTTCCA
ATAGGATTTAAAATGACTTTGGCTATACATCAGAAGCAGTGTATTTACAATTTCCAGTTA
TTTCAGTGCTCAATCAGTGCTTCTTTTCCCCACTTCAGTCTGCTATGTCAAAAAACTGCA
TCAAGCTTTTGTGTGAAGATCCCGTTTTTGCAGAGTATATAAAATGTATCCTGATGGATG
AAAGAACCTTCCTAAACAACAACATCGTCTACACATTCATGACACATTTTCTTCTAAAGG
TATGTCCCAAGTTGGAAACCAGGTATGAGTTACTTCCAGTTAGTTATGATTGTGTTTTCA
TTGTGTTGGTCTCGTGGAGACTTTTTTTTTTTTTAAATCGTCTTTTTCAGGTTCAAGGTC
AAGTGTTTTCTGAAGCAAACTGTGCCAATTTGATCAGTACTCTTATTACGAACTTGATAA
ATCAGTATCAGAACCTGCAATCTGACTTTACCAACCGAGTTGAGATTTCCAAAGCAAGTG
CTTCTTTAAATGGGGTAAGAAAAAAAATAAAAATAAATAAATGGGGTAAGAATTATGTAA
GGGAATAGTCACATACTTCAGAACTTTTCCTTAAATAACTCTAAATTTGACCTTAGTATA
TGCTTTTACTTTATACATAACTTCATTATTCAAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33417055|gb|AAH55938.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33417055|gb|AAH55938.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-375, + strand, RNAz p=0.644218

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-375, + strand, RNAz p=0.644218

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               47-561, gnl|bosTau2|chr13 (58250233-58250751)
               

               
               47-561, gnl|Hg17|chr2 (61329583-61329050)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-561, gnl|bosTau2|chr13 (58250233-58250751)
               

               
               47-561, gnl|Hg17|chr2 (61329583-61329050)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               thg (0.126791)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               ese (0.126502)

	47-561, gnl\|bosTau2\|chr13 (58250233-58250751)
	47-561, gnl\|Hg17\|chr2 (61329583-61329050)