Non-Coding RNA Search

Ss1.1-rthg06_n8.5

Sequence:


               
               GATGGTTAAAATAAAAATCAAAGGCATGACGACACAGAGCCAAAGTCCCCAGTAGGAACC
GTAAGTGAAGACGAATCCACACGGCACAGGTTTTCCCATAACATCCATCATCCTCAAGGG
GGGGGGGGTCCTCCGAAGGCATTGCTTCTATAGCCCAAAGCCTTTGTCCATACTCCCAGG
GGTCAGAGCTTCCTTCTTTCGCGCCAAGCCAAAGTTTCTACGTGGGATCCGATGCTGTCG
CCAGACCTTCAGCCAAAATCAGCCTTCAAATTAACCTGGACCGCCCAACCTCCGTGCCTT
TCCGTTACACCGTCCCAAGGGCAAACATTCCACCCTAACTCTCCAGAGGGTGAACTGCTC
CCACACCTAACTCAAACACTCTGGCCCCTCTCAAGCCTAATGAGCTGGGCCTTCAGCGCT
TTTCTGCCACCACTGACTACGATGACATAGCAAAGCAAAAAATACCTATGAAATCCTTCG
AGATCTTCACTCTCGTGCCGACTGGTAAGTGCAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGTTAAAATAAAAATCAAAGGCATGACGACACAGAGCCAAAGTCCCCAGTAGGAACC
GTAAGTGAAGACGAATCCACACGGCACAGGTTTTCCCATAACATCCATCATCCTCAAGGG
GGGGGGGGTCCTCCGAAGGCATTGCTTCTATAGCCCAAAGCCTTTGTCCATACTCCCAGG
GGTCAGAGCTTCCTTCTTTCGCGCCAAGCCAAAGTTTCTACGTGGGATCCGATGCTGTCG
CCAGACCTTCAGCCAAAATCAGCCTTCAAATTAACCTGGACCGCCCAACCTCCGTGCCTT
TCCGTTACACCGTCCCAAGGGCAAACATTCCACCCTAACTCTCCAGAGGGTGAACTGCTC
CCACACCTAACTCAAACACTCTGGCCCCTCTCAAGCCTAATGAGCTGGGCCTTCAGCGCT
TTTCTGCCACCACTGACTACGATGACATAGCAAAGCAAAAAATACCTATGAAATCCTTCG
AGATCTTCACTCTCGTGCCGACTGGTAAGTGCAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7959843|gb|AAF71092.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7959843|gb|AAF71092.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-513, gnl|bosTau2|chr14 (43814265-43813752)
               

               
               1-513, gnl|Hg17|chr8 (94821577-94822080)
               

               
               1-513, gnl|Mm7|chr4 (12068193-12067708)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-513, gnl|bosTau2|chr14 (43814265-43813752)
               

               
               1-513, gnl|Hg17|chr8 (94821577-94822080)
               

               
               1-513, gnl|Mm7|chr4 (12068193-12067708)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hea (0.204499)
               

               
               cki (0.165235)
               

               
               thg (0.126791)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               cki (0.165235)
               

               
               thg (0.126791)

	1-513, gnl\|bosTau2\|chr14 (43814265-43813752)
	1-513, gnl\|Hg17\|chr8 (94821577-94822080)
	1-513, gnl\|Mm7\|chr4 (12068193-12067708)