Non-Coding RNA Search

Ss1.1-rthg07_d4.5

Sequence:


               
               TATTCAGGCATTTTCAGATGAATTTGCCAGAAGGGCTAATGGAAATCTCATCAGTGACAA
AATTCCCAAGGCTGGAGATACACAAGGTTTCCCCAATTTAGGACTGCATGAAATGAAGAT
TGGCCCTATCATTTTCCAGGTAGCCTCTGGAAATATCGCCGCAGAGAAAGCGGATGTGAT
CGTAAAGTTCAACATCAAAGTCATTTACTCTCAAAGCAGGGGTCTCCAAAGCAATTTTAA
AATGTGCTGGGGAAAGTGTAGAAATGGAATGCTCTCAACAAGCTCAACAGGGCCACCATG
AATATATAGTTACCAAAGGTGGATTATTGAAGTGCAAGAATATTATTCATGTCATTGGTG
GAAATGATGTCAGGAGATCTGTTTCTTGTGTTCTGCAAGAGTGTGAAAAACGGAATTACT
CCTCAGTTTGCCTCCCAGCAATTGGGACAGGAAATGCCAGACAAGACCCAGATAATGTTG
CTACAGCCATAATTGATGCCATTGAAGACTTTGTGCAGAAAGGATCAGTTAAGTCTATGA
AAAAAGTTAAAGTTGTTATACTTCTGCCTGAAATACTGGACGTGTTTTATGCCAACCTGA
AAAAAAGAAAAGAATCTCAGCCTCCTCCCCAACAGTCCATGATGTCTAAGATTGCATCAT
TTTTGGGCTTCTCAAGTAAATCTCCCCCAAAACAGAATCTTTTGGTTTTGGAAAAGAAAA
CAGAATCAGCCGTTTTTCAGGTGTGTGGGGAAAATGTAAAATGCGTGGACCACGCCCTCT
CCTGGATACAAGATCTCATTAAAAAGGAACAGTGGCCCTACTGCAATGAAGATGAATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCAGGCATTTTCAGATGAATTTGCCAGAAGGGCTAATGGAAATCTCATCAGTGACAA
AATTCCCAAGGCTGGAGATACACAAGGTTTCCCCAATTTAGGACTGCATGAAATGAAGAT
TGGCCCTATCATTTTCCAGGTAGCCTCTGGAAATATCGCCGCAGAGAAAGCGGATGTGAT
CGTAAAGTTCAACATCAAAGTCATTTACTCTCAAAGCAGGGGTCTCCAAAGCAATTTTAA
AATGTGCTGGGGAAAGTGTAGAAATGGAATGCTCTCAACAAGCTCAACAGGGCCACCATG
AATATATAGTTACCAAAGGTGGATTATTGAAGTGCAAGAATATTATTCATGTCATTGGTG
GAAATGATGTCAGGAGATCTGTTTCTTGTGTTCTGCAAGAGTGTGAAAAACGGAATTACT
CCTCAGTTTGCCTCCCAGCAATTGGGACAGGAAATGCCAGACAAGACCCAGATAATGTTG
CTACAGCCATAATTGATGCCATTGAAGACTTTGTGCAGAAAGGATCAGTTAAGTCTATGA
AAAAAGTTAAAGTTGTTATACTTCTGCCTGAAATACTGGACGTGTTTTATGCCAACCTGA
AAAAAAGAAAAGAATCTCAGCCTCCTCCCCAACAGTCCATGATGTCTAAGATTGCATCAT
TTTTGGGCTTCTCAAGTAAATCTCCCCCAAAACAGAATCTTTTGGTTTTGGAAAAGAAAA
CAGAATCAGCCGTTTTTCAGGTGTGTGGGGAAAATGTAAAATGCGTGGACCACGCCCTCT
CCTGGATACAAGATCTCATTAAAAAGGAACAGTGGCCCTACTGCAATGAAGATGAATATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               281-451, gnl|bosTau2|chr1 (39255629-39255459)
               

               
               281-451, gnl|Hg17|chr3 (123915797-123915967)
               

               
               281-451, gnl|Mm7|chr16 (35518626-35518456)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-451, gnl|bosTau2|chr1 (39255629-39255459)
               

               
               281-451, gnl|Hg17|chr3 (123915797-123915967)
               

               
               281-451, gnl|Mm7|chr16 (35518626-35518456)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               thg (0.253582)
               

               
               cbl (0.229595)
               

               
               nlu (0.191681)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               cbl (0.229595)
               

               
               nlu (0.191681)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

	281-451, gnl\|bosTau2\|chr1 (39255629-39255459)
	281-451, gnl\|Hg17\|chr3 (123915797-123915967)
	281-451, gnl\|Mm7\|chr16 (35518626-35518456)

	thg (0.253582)
	cbl (0.229595)
	nlu (0.191681)
	spl (0.143184)
	cty (0.10408)