Ss1.1-rthg07_f10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAAAATCTACAGGCAACTTCCTCACTTTGACCGAAGCTCTTGACAAATACTCAGCTGAT GGTATGCGCTTGGCTCTGGCTGATGCTGGTGACACTGTTGAAGATGCTAACTTCGTGGAA GCCATGGCAGATGCAGGTGTTCTCCGTCTGTACACCTGGGTAGAATGGGTGAAAGAAATG GTTGCCAACTGGGATAGCCTAAGAAGTGGTCCTGCCAACACCTTCAATGATAGAGTTTTT GCCAGTGAAATGAATGCAGGAATTATAAAAACAGATCAAAACTATGAAAAGATGATGTTT AAAGAAGCTTTGAAAACAGGGTTTTTTGAGTTTCAGGCTGCGAAGGATAAGTATCGTGAG TTGGCCATAGAAGGGATGCACCGAGATCTCGTGTTCCGGTTTATTGAGGTTCAGACACTC CTCTTGGCTCCATTCTGTCCACATTTGTGTGAGCACATCTGGACCCTCCTGGGAAAGCCT GACTCAATTATGAATGCTTCATGGCCTGTAGCAGGCCCTGTGGATGAAAGCTTGATACGT TCCTCACAGTATCTCATGGAAGTAGCACATGACCTTAGACTGAGACTCAAGAACTATATG ACGCCAGCTAAAGGGAAGAAGCCTGACAAGCAGCCCCCTCAGAAGCCCTCACATTGCACC ATCTACGTGGCAAAGGACTATCCTTCTTGGCAGCACGTCACTCTGTCGGTTCTACGGAGT CACTTTGAGACCAGTAGCGGAAAATTGCCTGATAACAAAGTGATTGCTAGTGAACTAGGC AATTTGCCAGAATTGAAGAAATACATGAAGAAAGTGATGCCGTTTGTCGCCATGATTAAG GAAAATCTGGAGAAGACAGGCCCTCGTGTTCTGGATTTGCAATTAGAATTTGATGAACAG GCAGTACTCATGGAGAATATAGTCTATCTGACCAATTCCCTTGAGCTAGAACGTATAGAA GTCAAGTTTGCCTCTGAAGCAGAAGATAAAGTCAGGGAAGACTGCTGTCCTGGGAAGCCA CTTAATGTTTTTAGAACAGAACCTGGTGTGTTAGTTTCTCTAGTAAATCCTCAGCCATTT AGTGGCCACTTCTCAGCCAAAATTGAAATCCGGCAAGGAGATAATCGTGATTCTGTAATC AGGCGTTTAATGAAAGTGGACCGAGGAATCAAAGACCTTTCCAAAGTAAAACTGATGAGA TTTGATGATCCGCTCCTGGGGCCTCGGCGAGTTCCTGTGCTGGGAAAAGAGCACACTGAG AAGACCCCCATTTCTGAGCAGGCTGTTTTCCACGTGGACCTTACGAGCAAAAAAGTTCAT CTTACTGAAAATGGGCTACGGGCAGATATTGGTGATACAATGATCTATCTGGTTCATTAA ACTCACGCACATGGAGATTTTTCCTGTTTTCTGGGGATATTACTGCTCTGATTGTACCTA TAGATTGGCTACGAGAACCTTAGGCTGGACCAAAAGAGATTTCATTTCTAACTACCAAAT TCTGCATGTAATCATAATTATACATGTCATCTTGAATTCCTGGACCTAATAAATTTTTTT CATTCTTGAGGCCTCAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAAAATCTACAGGCAACTTCCTCACTTTGACCGAAGCTCTTGACAAATACTCAGCTGAT GGTATGCGCTTGGCTCTGGCTGATGCTGGTGACACTGTTGAAGATGCTAACTTCGTGGAA GCCATGGCAGATGCAGGTGTTCTCCGTCTGTACACCTGGGTAGAATGGGTGAAAGAAATG GTTGCCAACTGGGATAGCCTAAGAAGTGGTCCTGCCAACACCTTCAATGATAGAGTTTTT GCCAGTGAAATGAATGCAGGAATTATAAAAACAGATCAAAACTATGAAAAGATGATGTTT AAAGAAGCTTTGAAAACAGGGTTTTTTGAGTTTCAGGCTGCGAAGGATAAGTATCGTGAG TTGGCCATAGAAGGGATGCACCGAGATCTCGTGTTCCGGTTTATTGAGGTTCAGACACTC CTCTTGGCTCCATTCTGTCCACATTTGTGTGAGCACATCTGGACCCTCCTGGGAAAGCCT GACTCAATTATGAATGCTTCATGGCCTGTAGCAGGCCCTGTGGATGAAAGCTTGATACGT TCCTCACAGTATCTCATGGAAGTAGCACATGACCTTAGACTGAGACTCAAGAACTATATG ACGCCAGCTAAAGGGAAGAAGCCTGACAAGCAGCCCCCTCAGAAGCCCTCACATTGCACC ATCTACGTGGCAAAGGACTATCCTTCTTGGCAGCACGTCACTCTGTCGGTTCTACGGAGT CACTTTGAGACCAGTAGCGGAAAATTGCCTGATAACAAAGTGATTGCTAGTGAACTAGGC AATTTGCCAGAATTGAAGAAATACATGAAGAAAGTGATGCCGTTTGTCGCCATGATTAAG GAAAATCTGGAGAAGACAGGCCCTCGTGTTCTGGATTTGCAATTAGAATTTGATGAACAG GCAGTACTCATGGAGAATATAGTCTATCTGACCAATTCCCTTGAGCTAGAACGTATAGAA GTCAAGTTTGCCTCTGAAGCAGAAGATAAAGTCAGGGAAGACTGCTGTCCTGGGAAGCCA CTTAATGTTTTTAGAACAGAACCTGGTGTGTTAGTTTCTCTAGTAAATCCTCAGCCATTT AGTGGCCACTTCTCAGCCAAAATTGAAATCCGGCAAGGAGATAATCGTGATTCTGTAATC AGGCGTTTAATGAAAGTGGACCGAGGAATCAAAGACCTTTCCAAAGTAAAACTGATGAGA TTTGATGATCCGCTCCTGGGGCCTCGGCGAGTTCCTGTGCTGGGAAAAGAGCACACTGAG AAGACCCCCATTTCTGAGCAGGCTGTTTTCCACGTGGACCTTACGAGCAAAAAAGTTCAT CTTACTGAAAATGGGCTACGGGCAGATATTGGTGATACAATGATCTATCTGGTTCATTAA ACTCACGCACATGGAGATTTTTCCTGTTTTCTGGGGATATTACTGCTCTGATTGTACCTA TAGATTGGCTACGAGAACCTTAGGCTGGACCAAAAGAGATTTCATTTCTAACTACCAAAT TCTGCATGTAATCATAATTATACATGTCATCTTGAATTCCTGGACCTAATAAATTTTTTT CATTCTTGAGGCCTCAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 61-245, gnl|bosTau2|chr7 (38236316-38236132) | |
| 61-245, gnl|Hg17|chr5 (145492838-145492654) | |
| 61-245, gnl|Mm7|chr18 (42599576-42599392) | |
| 335-477, gnl|bosTau2|chr7 (38233081-38232939) | |
| 335-477, gnl|canFam2|chr2 (43415890-43416047) | |
| 335-477, gnl|danRer3|chr21 (29058088-29057931) | |
| 335-477, gnl|dasNov1|scaffold_78587 (5510-5669) | |
| 335-477, gnl|echTel1|scaffold_314782 (37825-38000) | |
| 335-477, gnl|fr1|chrUn (264050527-264050678) | |
| 335-477, gnl|galGal2|chr13 (16822864-16823040) | |
| 335-477, gnl|hg17|chr5 (145489772-145489929) | |
| 335-477, gnl|Hg17|chr5 (145489916-145489774) | |
| 335-477, gnl|mm7|chr18 (42596415-42596573) | |
| 335-477, gnl|Mm7|chr18 (42596559-42596417) | |
| 335-477, gnl|monDom2|scaffold_6 (60220160-60220003) | |
| 335-477, gnl|oryCun1|scaffold_210563 (71581-71424) | |
| 335-477, gnl|panTro1|chr4 (152215755-152215912) | |
| 335-477, gnl|rheMac2|chr6 (142598687-142598844) | |
| 335-477, gnl|rn3|chr18 (35450236-35450394) | |
| 335-477, gnl|tetNig1|chr7 (9261392-9261542) | |
| 335-477, gnl|xenTro1|scaffold_306 (1097545-1097702) | |
| 724-844, gnl|bosTau2|chr7 (38229282-38229162) | |
| 724-844, gnl|canFam2|chr2 (43406548-43406642) | |
| 724-844, gnl|danRer3|chr21 (29067277-29067200) | |
| 724-844, gnl|dasNov1|scaffold_78587 (1162-1256) | |
| 724-844, gnl|fr1|chrUn (264049223-264049301) | |
| 724-844, gnl|galGal2|chr13 (16820700-16820800) | |
| 724-844, gnl|hg17|chr5 (145486172-145486266) | |
| 724-844, gnl|Hg17|chr5 (145486307-145486187) | |
| 724-844, gnl|mm7|chr18 (42592651-42592748) | |
| 724-844, gnl|Mm7|chr18 (42592789-42592669) | |
| 724-844, gnl|monDom2|scaffold_6 (60227226-60227132) | |
| 724-844, gnl|oryCun1|scaffold_210563 (76769-76675) | |
| 724-844, gnl|panTro1|chr4 (152212171-152212265) | |
| 724-844, gnl|rheMac2|chr6 (142595124-142595218) | |
| 724-844, gnl|rn3|chr18 (35446601-35446698) | |
| 724-844, gnl|tetNig1|chr7 (9260120-9260203) | |
| 724-844, gnl|xenTro1|scaffold_306 (1096418-1096496) | |
| 941-1041, gnl|bosTau2|chr7 (38222275-38222175) | |
| 941-1041, gnl|canFam2|chr2 (43402544-43402706) | |
| 941-1041, gnl|danRer3|chr21 (29072401-29072258) | |
| 941-1041, gnl|dasNov1|scaffold_231640 (427-266) | |
| 941-1041, gnl|echTel1|scaffold_321701 (6751-6893) | |
| 941-1041, gnl|fr1|chrUn (264047908-264048049) | |
| 941-1041, gnl|galGal2|chr13 (16818214-16818339) | |
| 941-1041, gnl|hg17|chr5 (145482220-145482381) | |
| 941-1041, gnl|Hg17|chr5 (145482348-145482248) | |
| 941-1041, gnl|mm7|chr18 (42589048-42589209) | |
| 941-1041, gnl|Mm7|chr18 (42589176-42589076) | |
| 941-1041, gnl|monDom2|scaffold_6 (60234071-60233907) | |
| 941-1041, gnl|oryCun1|scaffold_210563 (81173-81014) | |
| 941-1041, gnl|panTro1|chr4 (152208222-152208383) | |
| 941-1041, gnl|rheMac2|chr6 (142590694-142590855) | |
| 941-1041, gnl|rn3|chr18 (35442602-35442759) | |
| 941-1041, gnl|tetNig1|chr7 (9258745-9258866) | |
| 941-1041, gnl|xenTro1|scaffold_306 (1095093-1095234) | |
| 1173-1584, gnl|bosTau2|chr7 (38216027-38215615) | |
| 1173-1584, gnl|Hg17|chr5 (145474069-145473648) | |
| 1173-1584, gnl|Mm7|chr18 (42580633-42580252) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-245, gnl|bosTau2|chr7 (38236316-38236132) | |
| 61-245, gnl|Hg17|chr5 (145492838-145492654) | |
| 61-245, gnl|Mm7|chr18 (42599576-42599392) | |
| 335-477, gnl|bosTau2|chr7 (38233081-38232939) | |
| 335-477, gnl|canFam2|chr2 (43415890-43416047) | |
| 335-477, gnl|danRer3|chr21 (29058088-29057931) | |
| 335-477, gnl|dasNov1|scaffold_78587 (5510-5669) | |
| 335-477, gnl|echTel1|scaffold_314782 (37825-38000) | |
| 335-477, gnl|fr1|chrUn (264050527-264050678) | |
| 335-477, gnl|galGal2|chr13 (16822864-16823040) | |
| 335-477, gnl|hg17|chr5 (145489772-145489929) | |
| 335-477, gnl|Hg17|chr5 (145489916-145489774) | |
| 335-477, gnl|mm7|chr18 (42596415-42596573) | |
| 335-477, gnl|Mm7|chr18 (42596559-42596417) | |
| 335-477, gnl|monDom2|scaffold_6 (60220160-60220003) | |
| 335-477, gnl|oryCun1|scaffold_210563 (71581-71424) | |
| 335-477, gnl|panTro1|chr4 (152215755-152215912) | |
| 335-477, gnl|rheMac2|chr6 (142598687-142598844) | |
| 335-477, gnl|rn3|chr18 (35450236-35450394) | |
| 335-477, gnl|tetNig1|chr7 (9261392-9261542) | |
| 335-477, gnl|xenTro1|scaffold_306 (1097545-1097702) | |
| 724-844, gnl|bosTau2|chr7 (38229282-38229162) | |
| 724-844, gnl|canFam2|chr2 (43406548-43406642) | |
| 724-844, gnl|danRer3|chr21 (29067277-29067200) | |
| 724-844, gnl|dasNov1|scaffold_78587 (1162-1256) | |
| 724-844, gnl|fr1|chrUn (264049223-264049301) | |
| 724-844, gnl|galGal2|chr13 (16820700-16820800) | |
| 724-844, gnl|hg17|chr5 (145486172-145486266) | |
| 724-844, gnl|Hg17|chr5 (145486307-145486187) | |
| 724-844, gnl|mm7|chr18 (42592651-42592748) | |
| 724-844, gnl|Mm7|chr18 (42592789-42592669) | |
| 724-844, gnl|monDom2|scaffold_6 (60227226-60227132) | |
| 724-844, gnl|oryCun1|scaffold_210563 (76769-76675) | |
| 724-844, gnl|panTro1|chr4 (152212171-152212265) | |
| 724-844, gnl|rheMac2|chr6 (142595124-142595218) | |
| 724-844, gnl|rn3|chr18 (35446601-35446698) | |
| 724-844, gnl|tetNig1|chr7 (9260120-9260203) | |
| 724-844, gnl|xenTro1|scaffold_306 (1096418-1096496) | |
| 941-1041, gnl|bosTau2|chr7 (38222275-38222175) | |
| 941-1041, gnl|canFam2|chr2 (43402544-43402706) | |
| 941-1041, gnl|danRer3|chr21 (29072401-29072258) | |
| 941-1041, gnl|dasNov1|scaffold_231640 (427-266) | |
| 941-1041, gnl|echTel1|scaffold_321701 (6751-6893) | |
| 941-1041, gnl|fr1|chrUn (264047908-264048049) | |
| 941-1041, gnl|galGal2|chr13 (16818214-16818339) | |
| 941-1041, gnl|hg17|chr5 (145482220-145482381) | |
| 941-1041, gnl|Hg17|chr5 (145482348-145482248) | |
| 941-1041, gnl|mm7|chr18 (42589048-42589209) | |
| 941-1041, gnl|Mm7|chr18 (42589176-42589076) | |
| 941-1041, gnl|monDom2|scaffold_6 (60234071-60233907) | |
| 941-1041, gnl|oryCun1|scaffold_210563 (81173-81014) | |
| 941-1041, gnl|panTro1|chr4 (152208222-152208383) | |
| 941-1041, gnl|rheMac2|chr6 (142590694-142590855) | |
| 941-1041, gnl|rn3|chr18 (35442602-35442759) | |
| 941-1041, gnl|tetNig1|chr7 (9258745-9258866) | |
| 941-1041, gnl|xenTro1|scaffold_306 (1095093-1095234) | |
| 1173-1584, gnl|bosTau2|chr7 (38216027-38215615) | |
| 1173-1584, gnl|Hg17|chr5 (145474069-145473648) | |
| 1173-1584, gnl|Mm7|chr18 (42580633-42580252) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| thg (0.380373) | |
| liv (0.292569) | |
| cty (0.20816) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| liv (0.292569) | |
| cty (0.20816) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| fat (0.147427) | |
| csk (0.140746) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| eje (0.0988338) | |
| ldo (0.0970026) |