Non-Coding RNA Search

Ss1.1-rthg07_j6.5

Sequence:


               
               GGTACATTCCTGCCTTTCTCTTAGTTGTCACGTGACTGGGACAAGAGAAGCCTTAGCCTG
TACTTGCTCCAATTCTAAATCCCCATTTGTTTTTGTTTTTATTTTGTAAATTTATAACTG
TAATTAAGAGAGTAATGCCCTCATTCGCACCACAACTCTGAATCTGCCAGAACTATTGAA
GCAGTAAATCCTCACTGCAAACTTTTGCCAAATGATAAGTTTCAACGAAACAATCTCTTC
ATAATGAAAGATTTGGAGAATTAGTGAGTCCAGTATATACTTCCATAAAAGTTTATTGTA
ATTAATAAATTCTTACTTTCTCTGATTACTTTCAGTATGATGTTTGGGGAGAAAAAGCCT
TTAAATGGATTTTCATGAAGGTGATAAGCCGCTTTGTCATTATCTGCATAACCACCGTGT
GAGTCTCTCCCAGGCTGGAACTGTGACAGTAATCAAGGGGAGTTACCAGAACAAACCTAA
TTTTGATAGCGTGGTTCTCTCCCCTTCAAAAGAAGAGGAGAAACAGTTTCCTTGTATATT
TAAAACTGTAATTGTCATCCTGATATACTCTAAGTTTCTAAAAAAAACGTGATATTAAAG
TAGATGTATTCCTTTCACATCACCGTAAAGGCTGGAGCAAAGGGATAAATCTTCAAAAAT
GTGTCACAATACTTTTTCAAATTTAAACTTGAACCCCAGTTCATCTCTCATTTCTGTTGT
GCTTATTAAAGGTTTCTTTACTTTTGATACACAGTATGCAGTTGTACTTGATCTTTTAAA
ATTGAAACGTGAGCTTATCAGCAAAAGACAAAAACAAAACTGCACAGTCATCATAATCAA
ATAGCAATTATACTGCACAATTCAGTGATTGTAAAGCATCCTGTAACAAGTAATGTTTGT
CTCCTATTTTTTGATACCTCTTAAACTTATGTCTTTTAGAAAGACAGTGCCTCTGTATGC
TTTTTGTATTTTTATTGAGTGTAAATATTTGTTATATTTTTGGTTAAGAGAATGTAAAAG
TACCATTTATTATCATATATACTACTACATTGGTGGAATCAATAAAGAGTCTAATTAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTACATTCCTGCCTTTCTCTTAGTTGTCACGTGACTGGGACAAGAGAAGCCTTAGCCTG
TACTTGCTCCAATTCTAAATCCCCATTTGTTTTTGTTTTTATTTTGTAAATTTATAACTG
TAATTAAGAGAGTAATGCCCTCATTCGCACCACAACTCTGAATCTGCCAGAACTATTGAA
GCAGTAAATCCTCACTGCAAACTTTTGCCAAATGATAAGTTTCAACGAAACAATCTCTTC
ATAATGAAAGATTTGGAGAATTAGTGAGTCCAGTATATACTTCCATAAAAGTTTATTGTA
ATTAATAAATTCTTACTTTCTCTGATTACTTTCAGTATGATGTTTGGGGAGAAAAAGCCT
TTAAATGGATTTTCATGAAGGTGATAAGCCGCTTTGTCATTATCTGCATAACCACCGTGT
GAGTCTCTCCCAGGCTGGAACTGTGACAGTAATCAAGGGGAGTTACCAGAACAAACCTAA
TTTTGATAGCGTGGTTCTCTCCCCTTCAAAAGAAGAGGAGAAACAGTTTCCTTGTATATT
TAAAACTGTAATTGTCATCCTGATATACTCTAAGTTTCTAAAAAAAACGTGATATTAAAG
TAGATGTATTCCTTTCACATCACCGTAAAGGCTGGAGCAAAGGGATAAATCTTCAAAAAT
GTGTCACAATACTTTTTCAAATTTAAACTTGAACCCCAGTTCATCTCTCATTTCTGTTGT
GCTTATTAAAGGTTTCTTTACTTTTGATACACAGTATGCAGTTGTACTTGATCTTTTAAA
ATTGAAACGTGAGCTTATCAGCAAAAGACAAAAACAAAACTGCACAGTCATCATAATCAA
ATAGCAATTATACTGCACAATTCAGTGATTGTAAAGCATCCTGTAACAAGTAATGTTTGT
CTCCTATTTTTTGATACCTCTTAAACTTATGTCTTTTAGAAAGACAGTGCCTCTGTATGC
TTTTTGTATTTTTATTGAGTGTAAATATTTGTTATATTTTTGGTTAAGAGAATGTAAAAG
TACCATTTATTATCATATATACTACTACATTGGTGGAATCAATAAAGAGTCTAATTAACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               791-1029, - strand, RNAz p=0.799682

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               791-1029, - strand, RNAz p=0.799682

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-388, gnl|bosTau2|chr7 (18675054-18674666)
               

               
               1-388, gnl|Hg17|chr5 (130788588-130788207)
               

               
               1-388, gnl|Mm7|chr11 (54655078-54655430)
               


               
               529-1075, gnl|bosTau2|chr7 (18674598-18674075)
               

               
               529-1075, gnl|Hg17|chr5 (130788111-130787516)
               

               
               529-1075, gnl|Mm7|chr11 (54655526-54656039)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-388, gnl|bosTau2|chr7 (18675054-18674666)
               

               
               1-388, gnl|Hg17|chr5 (130788588-130788207)
               

               
               1-388, gnl|Mm7|chr11 (54655078-54655430)
               


               
               529-1075, gnl|bosTau2|chr7 (18674598-18674075)
               

               
               529-1075, gnl|Hg17|chr5 (130788111-130787516)
               

               
               529-1075, gnl|Mm7|chr11 (54655526-54656039)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               tra (0.246184)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-388, gnl\|bosTau2\|chr7 (18675054-18674666)
	1-388, gnl\|Hg17\|chr5 (130788588-130788207)
	1-388, gnl\|Mm7\|chr11 (54655078-54655430)

	529-1075, gnl\|bosTau2\|chr7 (18674598-18674075)
	529-1075, gnl\|Hg17\|chr5 (130788111-130787516)
	529-1075, gnl\|Mm7\|chr11 (54655526-54656039)

	tra (0.246184)
	bfe (0.149858)
	liv (0.146284)
	nca (0.136874)
	sug (0.127291)
	thg (0.126791)
	cty (0.10408)
	jej (0.0989218)