Non-Coding RNA Search

Ss1.1-rthg09_o23.5

Sequence:


               
               TTCCTCTGCTCCTTCGAGCTTGTTATTTGGATGGAATTGCTGACACCCTTTTTTATAGAG
GGTCCTCCACTTGACCTTATTAAGGTTTCACTGGGATATGCTGCGATGTTTGAAATGGAC
ATGCATCATGGCCCCTTCATGAGCAGAACTGTAGCTCTGCAAAGAGAAGCTCTGTTGTGT
ATTGGGGCATATCCATCCACGTTCAGCTAGCTTTCACGGGGGTAACGGTATTTTCTGCTT
TGAAATTGGTTCTTTGTTTCTGAAGAAAGCATTTTTTTCACTTTATAGTTTGTATTTATA
ATAATTTGTTTCTGAAGAACTTTGCCAAGAGTTATAGATCAAAAAGCATTGTTACTAGTA
CAGAATATTTTTATATATATTTCTTCATGATGGTGTAATATTTTTTTAATTGCTCCAATG
CTTTGTTTGATTTGAGTACTTGTTTTTAAGAACTTGAAAAAGTGGGCTTGCTACATCTCT
GTTCAAAGAGACATTTGTTCAATCTCTGTGTGTCAATGCCTCGGTGAATTGGTTCTCTGT
GGTCACAATAAAGCATTGCTTCAGTTTATTCCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTCTGCTCCTTCGAGCTTGTTATTTGGATGGAATTGCTGACACCCTTTTTTATAGAG
GGTCCTCCACTTGACCTTATTAAGGTTTCACTGGGATATGCTGCGATGTTTGAAATGGAC
ATGCATCATGGCCCCTTCATGAGCAGAACTGTAGCTCTGCAAAGAGAAGCTCTGTTGTGT
ATTGGGGCATATCCATCCACGTTCAGCTAGCTTTCACGGGGGTAACGGTATTTTCTGCTT
TGAAATTGGTTCTTTGTTTCTGAAGAAAGCATTTTTTTCACTTTATAGTTTGTATTTATA
ATAATTTGTTTCTGAAGAACTTTGCCAAGAGTTATAGATCAAAAAGCATTGTTACTAGTA
CAGAATATTTTTATATATATTTCTTCATGATGGTGTAATATTTTTTTAATTGCTCCAATG
CTTTGTTTGATTTGAGTACTTGTTTTTAAGAACTTGAAAAAGTGGGCTTGCTACATCTCT
GTTCAAAGAGACATTTGTTCAATCTCTGTGTGTCAATGCCTCGGTGAATTGGTTCTCTGT
GGTCACAATAAAGCATTGCTTCAGTTTATTCCCACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               130-232, - strand, RNAz p=0.652389

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               130-232, - strand, RNAz p=0.652389

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               2-571, gnl|bosTau2|chr3 (46170412-46171006)
               

               
               2-571, gnl|canFam2|chr6 (66588295-66587315)
               

               
               2-571, gnl|dasNov1|scaffold_1254 (135869-134876)
               

               
               2-571, gnl|echTel1|scaffold_325074 (121080-120091)
               

               
               2-571, gnl|galGal2|chr8 (16959486-16958464)
               

               
               2-571, gnl|hg17|chr1 (84527597-84528604)
               

               
               2-571, gnl|Hg17|chr1 (84527918-84528505)
               

               
               2-571, gnl|loxAfr1|scaffold_20412 (35613-36607)
               

               
               2-571, gnl|mm7|chr3 (146544733-146543660)
               

               
               2-571, gnl|Mm7|chr3 (146544373-146543749)
               

               
               2-571, gnl|monDom2|scaffold_16 (3319151-3318140)
               

               
               2-571, gnl|oryCun1|scaffold_200993 (15406-16398)
               

               
               2-571, gnl|panTro1|chr1 (83197488-83198500)
               

               
               2-571, gnl|rheMac2|chr1 (87143227-87144237)
               

               
               2-571, gnl|rn3|chr2 (244831783-244830792)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-571, gnl|bosTau2|chr3 (46170412-46171006)
               

               
               2-571, gnl|canFam2|chr6 (66588295-66587315)
               

               
               2-571, gnl|dasNov1|scaffold_1254 (135869-134876)
               

               
               2-571, gnl|echTel1|scaffold_325074 (121080-120091)
               

               
               2-571, gnl|galGal2|chr8 (16959486-16958464)
               

               
               2-571, gnl|hg17|chr1 (84527597-84528604)
               

               
               2-571, gnl|Hg17|chr1 (84527918-84528505)
               

               
               2-571, gnl|loxAfr1|scaffold_20412 (35613-36607)
               

               
               2-571, gnl|mm7|chr3 (146544733-146543660)
               

               
               2-571, gnl|Mm7|chr3 (146544373-146543749)
               

               
               2-571, gnl|monDom2|scaffold_16 (3319151-3318140)
               

               
               2-571, gnl|oryCun1|scaffold_200993 (15406-16398)
               

               
               2-571, gnl|panTro1|chr1 (83197488-83198500)
               

               
               2-571, gnl|rheMac2|chr1 (87143227-87144237)
               

               
               2-571, gnl|rn3|chr2 (244831783-244830792)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               tra (0.123092)

	2-571, gnl\|bosTau2\|chr3 (46170412-46171006)
	2-571, gnl\|canFam2\|chr6 (66588295-66587315)
	2-571, gnl\|dasNov1\|scaffold_1254 (135869-134876)
	2-571, gnl\|echTel1\|scaffold_325074 (121080-120091)
	2-571, gnl\|galGal2\|chr8 (16959486-16958464)
	2-571, gnl\|hg17\|chr1 (84527597-84528604)
	2-571, gnl\|Hg17\|chr1 (84527918-84528505)
	2-571, gnl\|loxAfr1\|scaffold_20412 (35613-36607)
	2-571, gnl\|mm7\|chr3 (146544733-146543660)
	2-571, gnl\|Mm7\|chr3 (146544373-146543749)
	2-571, gnl\|monDom2\|scaffold_16 (3319151-3318140)
	2-571, gnl\|oryCun1\|scaffold_200993 (15406-16398)
	2-571, gnl\|panTro1\|chr1 (83197488-83198500)
	2-571, gnl\|rheMac2\|chr1 (87143227-87144237)
	2-571, gnl\|rn3\|chr2 (244831783-244830792)