Ss1.1-rthg10_d24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTCCGTGCGCCAGACGCTCGTTAGGGGGCAGCTCTTCCGCTGCGCGTTCGCAATGGC GGAGGCAATGGATTTGGGCAAAGACCCCAATGGGCCTACCCATTCGTCGACTCTTTTCCT GAGGGAGGATGGCAGCTCCATGTCCTTCTACGTGCGTCCCAGTCCGGCGAAGCGCCGGCT CTCGACGCTCATCCTGCACGGCGGCGGCACCCTGTGCCGGGTGCAGGAGCCGGGGGCCGT GCTGCTGGCCCAGCCCGGGGAGGCGGCGGCCGAGGCCTCGGGCGACTTCATCTCCACGCA GTACATCCTGGACTGCGTGGAGCGCAACGAGAAGCTCGAGCTGGAGGCCTACCGGCTGGG CCCGACTCCGGCGGACGACCAGGCCCCAGAGACGAAGCCCGGGGGGCAGGCCGGAGGCGG CGCCGCCGCCGCGGAGTCCGAGCCGCAGCCGCACGCGGGGCGGATCGGCTTCACGGACGC GGACGACGTGGCCATCTTGACCTACGTGAAGGAACATGCCCGCTCGCCCAGCTCGGTCAC CGGCAATGCCTTGTGGAAAGCGATGGAGAAGAGCTCGCTCACCCAGCATTCGTGGCAGTC CCTGAAGGACCGCTACCTCAAGCGCCTACGGGGCCAGGAGCATAAGTACCTGCTGGGGGA GGCCCCCGTGAGCCCTTCCTCGCAGAAACTCAAGCGGAAAGCTGAGCAAGACCCCGAGGC TGCTGATAGCGGGGAACCACAGAATAAGAGGACTCCAGACTTGCCTGAGGAAGAATTTGT GAAGGAAGAGATTAAAGAGAATGAAGAAGCGGTCAAAAAGATGCTTGTAGAAGCTACCCG GGAGTTTGAGGAGATTGTGGTGGACGAGAGCCCTGATTTTGAAATACACATAACAATGTG TGATGATGATCCACCCACACCTGAGGAAGACTCAGAAACACAGCCTGATGAGGAGGAAGA AGAAGAAGAAGAAAAAGTTTCTGCACCAGAGGTGGGAGCTGCCATTAAGATCATCCGGCA GTTAATGGAAAAGTTTAACTTGGATCTGTCAACAGTTACACAGGCCTTCCTAAAAAATAG TGGTGAGCTGGAGGCTACTTCCTCCTTTTTAGAGTCTGGGCAGAGGGCTGATGGATATCC CATTTGGTCCCGACAGGATGACTTAGATTTGCAAAAAGATGACGAGGGTACCCGAGATGC ATTGGTCAAAAAATTTGGTGCTCAGAATGTAGCTCGGAGGATTGAATTTCGAAAGAAATA ATTGGCAAGATAATGAGAGAAGAAGAAAGATTTGATGGATAAGGTGTTAAAATTTGTGAC TGTTGAACTTCAGAGATTTTTACATTGGAGCCGACACTTATCTTTTGACCAATGCTGCTG TTGCTCTATGAGTCCTAGATTTTGTAGCCAAGTAGAGTTGCGTAGGAGGATAAAAATAAA AGAAATTAGATTTATTTAGAACTGTTCCTGGCAGTGTGTTTATGAAAGGAAAACCAGAGA GAGGTTGGTCTACGTAGTAGTAATCCTTTTCTGGAATGAAATCCCTGCTATCTATATTGG TGGCAGGAGCTAGTGACAGTCAGAGGAGGAAAATCCGATGGGTCTTTTCAGACAGTGAAT AAAGAGCCTTATGTCCTTTGGCAGAAGCTCCTCTAGATGGTTACAGAATCCAGATCAATC TGGAAATGTGAACGGAGTTCTCTTGTGGTGCAGTGGCTGAAGGATCCGGTGTTGTCACTG TAGTGGCTTGGGTCCCAGCTGTGACATGAATTTGATACCTGGCCTGGGAACTTCCACATA CTGTGGGTGTGCCCCCCCAAAGCTAGAAATGTGGAGTGATTTAATCACAAGGCCTTGAAC ATGGACTGTCCCAAAACCTTGCATTCCCCGGTGAGCTCTGATTTCTATAGACTCCTTTGA AAATCCCATATTCCTTTTGCCATGTTAATATTTGGTGATCCTGTTCCTTGGCTGTTCTTT TCTTTGAGTCTGTGTCAGTTCAGTCTCTAGCATGTGTTTCTTTACCTATTGTCCTGTTCT GTTTAAAACATACACAAAAACTCTATAGAGTCTCGAGAAAAGTCTTACTTGGTTACCAGT TATGTGATTTTATTTATTGAGGATAGTTGTGTGCTAAGAACTGTGTTAGATTTAAAAATT AGAGGATTAATTCCTCTTTGTTGTGTTGCTTTCATTATTAAAAATAAATAGAACTTTGTA TATGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTCCGTGCGCCAGACGCTCGTTAGGGGGCAGCTCTTCCGCTGCGCGTTCGCAATGGC GGAGGCAATGGATTTGGGCAAAGACCCCAATGGGCCTACCCATTCGTCGACTCTTTTCCT GAGGGAGGATGGCAGCTCCATGTCCTTCTACGTGCGTCCCAGTCCGGCGAAGCGCCGGCT CTCGACGCTCATCCTGCACGGCGGCGGCACCCTGTGCCGGGTGCAGGAGCCGGGGGCCGT GCTGCTGGCCCAGCCCGGGGAGGCGGCGGCCGAGGCCTCGGGCGACTTCATCTCCACGCA GTACATCCTGGACTGCGTGGAGCGCAACGAGAAGCTCGAGCTGGAGGCCTACCGGCTGGG CCCGACTCCGGCGGACGACCAGGCCCCAGAGACGAAGCCCGGGGGGCAGGCCGGAGGCGG CGCCGCCGCCGCGGAGTCCGAGCCGCAGCCGCACGCGGGGCGGATCGGCTTCACGGACGC GGACGACGTGGCCATCTTGACCTACGTGAAGGAACATGCCCGCTCGCCCAGCTCGGTCAC CGGCAATGCCTTGTGGAAAGCGATGGAGAAGAGCTCGCTCACCCAGCATTCGTGGCAGTC CCTGAAGGACCGCTACCTCAAGCGCCTACGGGGCCAGGAGCATAAGTACCTGCTGGGGGA GGCCCCCGTGAGCCCTTCCTCGCAGAAACTCAAGCGGAAAGCTGAGCAAGACCCCGAGGC TGCTGATAGCGGGGAACCACAGAATAAGAGGACTCCAGACTTGCCTGAGGAAGAATTTGT GAAGGAAGAGATTAAAGAGAATGAAGAAGCGGTCAAAAAGATGCTTGTAGAAGCTACCCG GGAGTTTGAGGAGATTGTGGTGGACGAGAGCCCTGATTTTGAAATACACATAACAATGTG TGATGATGATCCACCCACACCTGAGGAAGACTCAGAAACACAGCCTGATGAGGAGGAAGA AGAAGAAGAAGAAAAAGTTTCTGCACCAGAGGTGGGAGCTGCCATTAAGATCATCCGGCA GTTAATGGAAAAGTTTAACTTGGATCTGTCAACAGTTACACAGGCCTTCCTAAAAAATAG TGGTGAGCTGGAGGCTACTTCCTCCTTTTTAGAGTCTGGGCAGAGGGCTGATGGATATCC CATTTGGTCCCGACAGGATGACTTAGATTTGCAAAAAGATGACGAGGGTACCCGAGATGC ATTGGTCAAAAAATTTGGTGCTCAGAATGTAGCTCGGAGGATTGAATTTCGAAAGAAATA ATTGGCAAGATAATGAGAGAAGAAGAAAGATTTGATGGATAAGGTGTTAAAATTTGTGAC TGTTGAACTTCAGAGATTTTTACATTGGAGCCGACACTTATCTTTTGACCAATGCTGCTG TTGCTCTATGAGTCCTAGATTTTGTAGCCAAGTAGAGTTGCGTAGGAGGATAAAAATAAA AGAAATTAGATTTATTTAGAACTGTTCCTGGCAGTGTGTTTATGAAAGGAAAACCAGAGA GAGGTTGGTCTACGTAGTAGTAATCCTTTTCTGGAATGAAATCCCTGCTATCTATATTGG TGGCAGGAGCTAGTGACAGTCAGAGGAGGAAAATCCGATGGGTCTTTTCAGACAGTGAAT AAAGAGCCTTATGTCCTTTGGCAGAAGCTCCTCTAGATGGTTACAGAATCCAGATCAATC TGGAAATGTGAACGGAGTTCTCTTGTGGTGCAGTGGCTGAAGGATCCGGTGTTGTCACTG TAGTGGCTTGGGTCCCAGCTGTGACATGAATTTGATACCTGGCCTGGGAACTTCCACATA CTGTGGGTGTGCCCCCCCAAAGCTAGAAATGTGGAGTGATTTAATCACAAGGCCTTGAAC ATGGACTGTCCCAAAACCTTGCATTCCCCGGTGAGCTCTGATTTCTATAGACTCCTTTGA AAATCCCATATTCCTTTTGCCATGTTAATATTTGGTGATCCTGTTCCTTGGCTGTTCTTT TCTTTGAGTCTGTGTCAGTTCAGTCTCTAGCATGTGTTTCTTTACCTATTGTCCTGTTCT GTTTAAAACATACACAAAAACTCTATAGAGTCTCGAGAAAAGTCTTACTTGGTTACCAGT TATGTGATTTTATTTATTGAGGATAGTTGTGTGCTAAGAACTGTGTTAGATTTAAAAATT AGAGGATTAATTCCTCTTTGTTGTGTTGCTTTCATTATTAAAAATAAATAGAACTTTGTA TATGAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 211-410, + strand, RNAz p=0.958042 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 211-410, + strand, RNAz p=0.958042 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF289599, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 18-732, gnl|bosTau2|chr18 (1627681-1626966) | |
| 18-732, gnl|Hg17|chr16 (74239238-74239949) | |
| 18-732, gnl|Mm7|chr8 (110611500-110612185) | |
| 859-1423, gnl|bosTau2|chr18 (1622479-1621920) | |
| 859-1423, gnl|Hg17|chr16 (74247605-74248157) | |
| 859-1423, gnl|Mm7|chr8 (110617883-110618356) | |
| 1820-2225, gnl|bosTau2|chr18 (1621583-1621186) | |
| 1820-2225, gnl|canFam2|chr5 (78169993-78169510) | |
| 1820-2225, gnl|canFam2|chr5 (78169993-78169412) | |
| 1820-2225, gnl|dasNov1|scaffold_20453 (44024-44631) | |
| 1820-2225, gnl|dasNov1|scaffold_5722 (36199-36691) | |
| 1820-2225, gnl|echTel1|scaffold_49 (8907-8422) | |
| 1820-2225, gnl|echTel1|scaffold_49 (8907-8343) | |
| 1820-2225, gnl|hg17|chr16 (74248211-74248785) | |
| 1820-2225, gnl|Hg17|chr16 (74248434-74248831) | |
| 1820-2225, gnl|hg17|chr22 (16273657-16274138) | |
| 1820-2225, gnl|mm7|chr8 (110618439-110618912) | |
| 1820-2225, gnl|mm7|chr8 (110618439-110619191) | |
| 1820-2225, gnl|Mm7|chr8 (110618665-110619236) | |
| 1820-2225, gnl|oryCun1|scaffold_173333 (41870-42346) | |
| 1820-2225, gnl|oryCun1|scaffold_173333 (41870-42453) | |
| 1820-2225, gnl|panTro1|chr18 (68655756-68656330) | |
| 1820-2225, gnl|panTro1|chr23 (16140673-16141154) | |
| 1820-2225, gnl|rheMac2|chr10 (62095215-62095698) | |
| 1820-2225, gnl|rheMac2|chr20 (73775037-73775610) | |
| 1820-2225, gnl|rn3|chr19 (41959017-41959589) | |
| 1820-2225, gnl|rn3|chr19 (41959017-41959745) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-732, gnl|bosTau2|chr18 (1627681-1626966) | |
| 18-732, gnl|Hg17|chr16 (74239238-74239949) | |
| 18-732, gnl|Mm7|chr8 (110611500-110612185) | |
| 859-1423, gnl|bosTau2|chr18 (1622479-1621920) | |
| 859-1423, gnl|Hg17|chr16 (74247605-74248157) | |
| 859-1423, gnl|Mm7|chr8 (110617883-110618356) | |
| 1820-2225, gnl|bosTau2|chr18 (1621583-1621186) | |
| 1820-2225, gnl|canFam2|chr5 (78169993-78169510) | |
| 1820-2225, gnl|canFam2|chr5 (78169993-78169412) | |
| 1820-2225, gnl|dasNov1|scaffold_20453 (44024-44631) | |
| 1820-2225, gnl|dasNov1|scaffold_5722 (36199-36691) | |
| 1820-2225, gnl|echTel1|scaffold_49 (8907-8422) | |
| 1820-2225, gnl|echTel1|scaffold_49 (8907-8343) | |
| 1820-2225, gnl|hg17|chr16 (74248211-74248785) | |
| 1820-2225, gnl|Hg17|chr16 (74248434-74248831) | |
| 1820-2225, gnl|hg17|chr22 (16273657-16274138) | |
| 1820-2225, gnl|mm7|chr8 (110618439-110618912) | |
| 1820-2225, gnl|mm7|chr8 (110618439-110619191) | |
| 1820-2225, gnl|Mm7|chr8 (110618665-110619236) | |
| 1820-2225, gnl|oryCun1|scaffold_173333 (41870-42346) | |
| 1820-2225, gnl|oryCun1|scaffold_173333 (41870-42453) | |
| 1820-2225, gnl|panTro1|chr18 (68655756-68656330) | |
| 1820-2225, gnl|panTro1|chr23 (16140673-16141154) | |
| 1820-2225, gnl|rheMac2|chr10 (62095215-62095698) | |
| 1820-2225, gnl|rheMac2|chr20 (73775037-73775610) | |
| 1820-2225, gnl|rn3|chr19 (41959017-41959589) | |
| 1820-2225, gnl|rn3|chr19 (41959017-41959745) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| fce (0.814775) | |
| cmu (0.745573) | |
| kid (0.518941) | |
| tra (0.492368) | |
| ece (0.45861) | |
| nmm (0.398406) | |
| ret (0.3862) | |
| sug (0.381874) | |
| pgl (0.35545) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| spl (0.286369) | |
| csk (0.281492) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| cly (0.241284) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cje (0.165235) | |
| mga (0.160205) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ese (0.126502) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.814775) | |
| cmu (0.745573) | |
| kid (0.518941) | |
| tra (0.492368) | |
| ece (0.45861) | |
| nmm (0.398406) | |
| ret (0.3862) | |
| sug (0.381874) | |
| pgl (0.35545) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| spl (0.286369) | |
| csk (0.281492) | |
| lyg (0.266205) | |
| thg (0.253582) | |
| cly (0.241284) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| cje (0.165235) | |
| mga (0.160205) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ese (0.126502) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |