Non-Coding RNA Search

Ss1.1-rthg10_h10.5

Sequence:


               
               AATAAAGCTTTCTGTAATTCACGTAATTAGGAGGAAAAGAGTTTTACTTTTACCTTGCTA
TGTCTTGGTCTTGAATCTCAGTCCTGCTACATTTTCAATTTCTATATAATTTTCTAATCC
CACAGGAAAATGGGAGAACATTTTGACCTGCCACTAAGTAGTGCTTGTATATGTAGTAAG
CCTAGCAAAGGTTAATTAATGTTAACAGAGTATTTTTGTTTGATTTTAACATATGGATGG
AAAACATTAAGTAATGCATGACACCCAAAACGACCAGGCAAGAACTATACCTGTACTATG
GATGTCAAAATGGATTATCTCCTATATCCCTTGTCTCATTTTTTGAAGCCACAGTTAAAT
AAATGATGATTCATATCTCAGTTTTAGAAGATGGGTTGTGAAAATAAGTTGACCTCTAAA
AGGGAGAGAAAAAAGAAATAGGTAGAACTCTTTTAAGTAATAATTGATGTTTCAACTCTC
CATTGTAGATTAAATATTTGCTAAAAATGTTTCTTTCAGATCTTGGACTTTATAATGAAG
CTGTGAAAATTATCCATGAGTTCCCTCAGTATTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAAGCTTTCTGTAATTCACGTAATTAGGAGGAAAAGAGTTTTACTTTTACCTTGCTA
TGTCTTGGTCTTGAATCTCAGTCCTGCTACATTTTCAATTTCTATATAATTTTCTAATCC
CACAGGAAAATGGGAGAACATTTTGACCTGCCACTAAGTAGTGCTTGTATATGTAGTAAG
CCTAGCAAAGGTTAATTAATGTTAACAGAGTATTTTTGTTTGATTTTAACATATGGATGG
AAAACATTAAGTAATGCATGACACCCAAAACGACCAGGCAAGAACTATACCTGTACTATG
GATGTCAAAATGGATTATCTCCTATATCCCTTGTCTCATTTTTTGAAGCCACAGTTAAAT
AAATGATGATTCATATCTCAGTTTTAGAAGATGGGTTGTGAAAATAAGTTGACCTCTAAA
AGGGAGAGAAAAAAGAAATAGGTAGAACTCTTTTAAGTAATAATTGATGTTTCAACTCTC
CATTGTAGATTAAATATTTGCTAAAAATGTTTCTTTCAGATCTTGGACTTTATAATGAAG
CTGTGAAAATTATCCATGAGTTCCCTCAGTATTTTC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-217, gnl|bosTau2|chr4 (3482708-3482924)
               

               
               1-217, gnl|canFam2|chr14 (26180141-26180278)
               

               
               1-217, gnl|dasNov1|scaffold_3064 (73847-73705)
               

               
               1-217, gnl|hg17|chr7 (7450253-7450403)
               

               
               1-217, gnl|Hg17|chr7 (7450731-7450263)
               

               
               1-217, gnl|loxAfr1|scaffold_8285 (38876-38764)
               

               
               1-217, gnl|mm7|chr6 (8214760-8214874)
               

               
               1-217, gnl|Mm7|chr6 (8214955-8214770)
               

               
               1-217, gnl|oryCun1|scaffold_182699 (22109-22225)
               

               
               1-217, gnl|panTro1|chr6 (7912258-7912408)
               

               
               1-217, gnl|rheMac2|chr3 (118751264-118751115)
               

               
               1-217, gnl|rn3|chr4 (33423431-33423547)
               


               
               338-576, gnl|bosTau2|chr4 (3483115-3483352)
               

               
               338-576, gnl|Hg17|chr7 (7450122-7449897)
               

               
               338-576, gnl|Mm7|chr6 (8214654-8214455)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-217, gnl|bosTau2|chr4 (3482708-3482924)
               

               
               1-217, gnl|canFam2|chr14 (26180141-26180278)
               

               
               1-217, gnl|dasNov1|scaffold_3064 (73847-73705)
               

               
               1-217, gnl|hg17|chr7 (7450253-7450403)
               

               
               1-217, gnl|Hg17|chr7 (7450731-7450263)
               

               
               1-217, gnl|loxAfr1|scaffold_8285 (38876-38764)
               

               
               1-217, gnl|mm7|chr6 (8214760-8214874)
               

               
               1-217, gnl|Mm7|chr6 (8214955-8214770)
               

               
               1-217, gnl|oryCun1|scaffold_182699 (22109-22225)
               

               
               1-217, gnl|panTro1|chr6 (7912258-7912408)
               

               
               1-217, gnl|rheMac2|chr3 (118751264-118751115)
               

               
               1-217, gnl|rn3|chr4 (33423431-33423547)
               


               
               338-576, gnl|bosTau2|chr4 (3483115-3483352)
               

               
               338-576, gnl|Hg17|chr7 (7450122-7449897)
               

               
               338-576, gnl|Mm7|chr6 (8214654-8214455)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               thg (0.253582)
               

               
               fty (0.17584)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               fty (0.17584)

	1-217, gnl\|bosTau2\|chr4 (3482708-3482924)
	1-217, gnl\|canFam2\|chr14 (26180141-26180278)
	1-217, gnl\|dasNov1\|scaffold_3064 (73847-73705)
	1-217, gnl\|hg17\|chr7 (7450253-7450403)
	1-217, gnl\|Hg17\|chr7 (7450731-7450263)
	1-217, gnl\|loxAfr1\|scaffold_8285 (38876-38764)
	1-217, gnl\|mm7\|chr6 (8214760-8214874)
	1-217, gnl\|Mm7\|chr6 (8214955-8214770)
	1-217, gnl\|oryCun1\|scaffold_182699 (22109-22225)
	1-217, gnl\|panTro1\|chr6 (7912258-7912408)
	1-217, gnl\|rheMac2\|chr3 (118751264-118751115)
	1-217, gnl\|rn3\|chr4 (33423431-33423547)

	338-576, gnl\|bosTau2\|chr4 (3483115-3483352)
	338-576, gnl\|Hg17\|chr7 (7450122-7449897)
	338-576, gnl\|Mm7\|chr6 (8214654-8214455)