Non-Coding RNA Search

Ss1.1-rthg10_n20.5

Sequence:


               
               TTCTTTTCACTGCATAGGTATTTATTGAGCGTCTCTCCTGTGCCAGGCACTGTGCAGGGT
GCTGCATATACAGTGTTGAGAACAGACAGGACTGGCTGTGCTCATGGATCTCACATTTAA
CAGCAGAAACTGCAGGGGGTTAGAATAGCCTGGAACCACTGTACAACAAAGGAAAAAGAG
TGAGGAAAGCATTTGGGATTTGAACATCTGTACTGATCATAGTGACCGTGTTTCATATTG
GGTATGTTTTACATTTATGATTTCAGTATCATTTTTCTCTTTTTTCACTTCAATTTTTTT
CAGGTAGCAATGTGAGAACAGTTTTATCAGGTGAATTTCTGATGTTCTGACACCATAATT
TTACTTCCTGCCCTGGTAAAAGATAATAGATGTGTGTTGGGGATTAAGAGGGATTGTATG
TTATTTGTTATGCCTGTAATGCCCAGGTTGCCACTCTAGATAAATTGAAGCATTTTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTTCACTGCATAGGTATTTATTGAGCGTCTCTCCTGTGCCAGGCACTGTGCAGGGT
GCTGCATATACAGTGTTGAGAACAGACAGGACTGGCTGTGCTCATGGATCTCACATTTAA
CAGCAGAAACTGCAGGGGGTTAGAATAGCCTGGAACCACTGTACAACAAAGGAAAAAGAG
TGAGGAAAGCATTTGGGATTTGAACATCTGTACTGATCATAGTGACCGTGTTTCATATTG
GGTATGTTTTACATTTATGATTTCAGTATCATTTTTCTCTTTTTTCACTTCAATTTTTTT
CAGGTAGCAATGTGAGAACAGTTTTATCAGGTGAATTTCTGATGTTCTGACACCATAATT
TTACTTCCTGCCCTGGTAAAAGATAATAGATGTGTGTTGGGGATTAAGAGGGATTGTATG
TTATTTGTTATGCCTGTAATGCCCAGGTTGCCACTCTAGATAAATTGAAGCATTTTATGT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-284, gnl|bosTau2|chr4 (43783869-43783599)
               

               
               1-284, gnl|canFam2|chr14 (19224257-19224733)
               

               
               1-284, gnl|dasNov1|scaffold_36929 (1325-879)
               

               
               1-284, gnl|hg17|chr7 (89661524-89661975)
               

               
               1-284, gnl|Hg17|chr7 (89661581-89661847)
               

               
               1-284, gnl|loxAfr1|scaffold_31236 (6039-5563)
               

               
               1-284, gnl|mm7|chr5 (5543457-5543081)
               

               
               1-284, gnl|panTro1|chr6 (91215430-91215882)
               

               
               1-284, gnl|rheMac2|chr3 (126816559-126816140)
               

               
               1-284, gnl|rn3|chr4 (25181642-25182055)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-284, gnl|bosTau2|chr4 (43783869-43783599)
               

               
               1-284, gnl|canFam2|chr14 (19224257-19224733)
               

               
               1-284, gnl|dasNov1|scaffold_36929 (1325-879)
               

               
               1-284, gnl|hg17|chr7 (89661524-89661975)
               

               
               1-284, gnl|Hg17|chr7 (89661581-89661847)
               

               
               1-284, gnl|loxAfr1|scaffold_31236 (6039-5563)
               

               
               1-284, gnl|mm7|chr5 (5543457-5543081)
               

               
               1-284, gnl|panTro1|chr6 (91215430-91215882)
               

               
               1-284, gnl|rheMac2|chr3 (126816559-126816140)
               

               
               1-284, gnl|rn3|chr4 (25181642-25182055)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               thg (0.253582)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)

	1-284, gnl\|bosTau2\|chr4 (43783869-43783599)
	1-284, gnl\|canFam2\|chr14 (19224257-19224733)
	1-284, gnl\|dasNov1\|scaffold_36929 (1325-879)
	1-284, gnl\|hg17\|chr7 (89661524-89661975)
	1-284, gnl\|Hg17\|chr7 (89661581-89661847)
	1-284, gnl\|loxAfr1\|scaffold_31236 (6039-5563)
	1-284, gnl\|mm7\|chr5 (5543457-5543081)
	1-284, gnl\|panTro1\|chr6 (91215430-91215882)
	1-284, gnl\|rheMac2\|chr3 (126816559-126816140)
	1-284, gnl\|rn3\|chr4 (25181642-25182055)