Non-Coding RNA Search

Ss1.1-rthg11_c6.5

Sequence:


               
               TGCAACCTCATGGTTCCTAGTCAGATTCACTTCTGCTGCAACACAAGAGGAACTCCTAGT
GAAGTTTTTGTATTATTTATATAAGATATAATGCTATTGCAGACTTAATAGTCTAAGCAC
TATGTAAACACAATTTGATATGTACTTGGAAATCAAAAATTTTACTCACTTTGTTGTGAT
ATTCACCTTAGTGCAGCTGTGGATCCATGTTTGAAGTGTGAATCTGAGATATGCCTATAC
ATGAAGAATAAGAGTTTAGACCTGCCAAATGCTTATCACTGTGCCACTATGGGAACTCCC
TCTCTTGCTCTTTCTTGGATCATTCAGTCTTGGGGAAGCCAGCTCCCATGCATGAGAATA
CTTGAGGAGTCTACAGACAGGTCCATGTGACAGAGAACTGAAGCCTCCTGCCAATCACCA
TGTGATTGAGAAATCCTGAAAGCAGATCTTCCAGCCCCAGGCAAGCCTTCAAATGACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAACCTCATGGTTCCTAGTCAGATTCACTTCTGCTGCAACACAAGAGGAACTCCTAGT
GAAGTTTTTGTATTATTTATATAAGATATAATGCTATTGCAGACTTAATAGTCTAAGCAC
TATGTAAACACAATTTGATATGTACTTGGAAATCAAAAATTTTACTCACTTTGTTGTGAT
ATTCACCTTAGTGCAGCTGTGGATCCATGTTTGAAGTGTGAATCTGAGATATGCCTATAC
ATGAAGAATAAGAGTTTAGACCTGCCAAATGCTTATCACTGTGCCACTATGGGAACTCCC
TCTCTTGCTCTTTCTTGGATCATTCAGTCTTGGGGAAGCCAGCTCCCATGCATGAGAATA
CTTGAGGAGTCTACAGACAGGTCCATGTGACAGAGAACTGAAGCCTCCTGCCAATCACCA
TGTGATTGAGAAATCCTGAAAGCAGATCTTCCAGCCCCAGGCAAGCCTTCAAATGACTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               300-413, + strand, RNAz p=0.938628

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-413, + strand, RNAz p=0.938628

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               300-480, gnl|bosTau2|chr11 (12433055-12432874)
               

               
               300-480, gnl|canFam2|chr17 (29383629-29383991)
               

               
               300-480, gnl|dasNov1|scaffold_2862 (48798-49131)
               

               
               300-480, gnl|hg17|chr2 (33262605-33262960)
               

               
               300-480, gnl|Hg17|chr2 (33262889-33262702)
               

               
               300-480, gnl|loxAfr1|scaffold_31036 (36521-36884)
               

               
               300-480, gnl|panTro1|chr12 (34290355-34290711)
               

               
               300-480, gnl|rheMac2|chr13 (33113837-33114191)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               300-480, gnl|bosTau2|chr11 (12433055-12432874)
               

               
               300-480, gnl|canFam2|chr17 (29383629-29383991)
               

               
               300-480, gnl|dasNov1|scaffold_2862 (48798-49131)
               

               
               300-480, gnl|hg17|chr2 (33262605-33262960)
               

               
               300-480, gnl|Hg17|chr2 (33262889-33262702)
               

               
               300-480, gnl|loxAfr1|scaffold_31036 (36521-36884)
               

               
               300-480, gnl|panTro1|chr12 (34290355-34290711)
               

               
               300-480, gnl|rheMac2|chr13 (33113837-33114191)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               thg (0.507164)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               tes (0.207814)

	300-480, gnl\|bosTau2\|chr11 (12433055-12432874)
	300-480, gnl\|canFam2\|chr17 (29383629-29383991)
	300-480, gnl\|dasNov1\|scaffold_2862 (48798-49131)
	300-480, gnl\|hg17\|chr2 (33262605-33262960)
	300-480, gnl\|Hg17\|chr2 (33262889-33262702)
	300-480, gnl\|loxAfr1\|scaffold_31036 (36521-36884)
	300-480, gnl\|panTro1\|chr12 (34290355-34290711)
	300-480, gnl\|rheMac2\|chr13 (33113837-33114191)