Non-Coding RNA Search

Ss1.1-rthg11_d19.5

Sequence:


               
               GCCGAGAGCGACGGTTCTCTACTTTTAGAGTCCAAAATAAATCCTAATACTGCATACCAG
AAACAACAGGACACTTTGATTGTGTGGTCTGAAGCAGAAAATTATGACTTGGCCCTTAGC
TTTCAAGAAAAAGCTGGATGTGATGAAATTTGGGAGAAAATATGTCAGGTTCAAGGAAAG
GACCCGTCAGTGGACATCACTCAGGACCTTGTAGATGAGTCTGAAGAGGAACGTTTTGAT
GATATGTCATCGCCAGGTTTAGAATTGCCATCTTGTGAATTAAGTCGCCTTGAGGAAATT
GCAGAACTTGTGGCATCATCTTTACCTTCTCCCCTGCGTCGTGAAAAACTTGCACTAGCA
CTGGAAAATGAGGGTTATATTAAAAAGCTCTTAGAGCTTTTTCATGTGTGTGAGGATTTG
GAGAATATTGAAGGACTGCACCACTTGTATGAAATTATCAAAGGCATCTTCCTCTTGAAT
CGAACTGCTCTTTTTGAAGTTATGTTCTCCGAGGAATGTATAATGGACGTCATTGGATGC
TTAGAATACGATCCTGCTTTATCACAACCACGAAAACATAGGGAATTTCTAACAAAAACA
GCCAAGTTTAAAGAAGTGATTCCCATATCAGATCCTGAGCTGAAACAAAAAATTCATCAG
ACATACAGAGTTCAATATATACAGGATATGGTTCTACCTACCCCTTCAGTCTTTGAAGAA
AATATGTTATCAACTCTTCACTCTTTTATCTTTTTCAATAAAGTAGAAATTGTTGGTATG
TTACAGGTAAGTTACCATTCTTTTTTCTCCTACTTAAAAAGATAGCTAGGAGTTCTCCTG
TGGTGCAGCGGTTAAGGATCTGGCATTGTCAATGCAGGGGCTCAGGTTTGATCCCTGGCC
CGAGAACTTCCACATGCTGCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGAGAGCGACGGTTCTCTACTTTTAGAGTCCAAAATAAATCCTAATACTGCATACCAG
AAACAACAGGACACTTTGATTGTGTGGTCTGAAGCAGAAAATTATGACTTGGCCCTTAGC
TTTCAAGAAAAAGCTGGATGTGATGAAATTTGGGAGAAAATATGTCAGGTTCAAGGAAAG
GACCCGTCAGTGGACATCACTCAGGACCTTGTAGATGAGTCTGAAGAGGAACGTTTTGAT
GATATGTCATCGCCAGGTTTAGAATTGCCATCTTGTGAATTAAGTCGCCTTGAGGAAATT
GCAGAACTTGTGGCATCATCTTTACCTTCTCCCCTGCGTCGTGAAAAACTTGCACTAGCA
CTGGAAAATGAGGGTTATATTAAAAAGCTCTTAGAGCTTTTTCATGTGTGTGAGGATTTG
GAGAATATTGAAGGACTGCACCACTTGTATGAAATTATCAAAGGCATCTTCCTCTTGAAT
CGAACTGCTCTTTTTGAAGTTATGTTCTCCGAGGAATGTATAATGGACGTCATTGGATGC
TTAGAATACGATCCTGCTTTATCACAACCACGAAAACATAGGGAATTTCTAACAAAAACA
GCCAAGTTTAAAGAAGTGATTCCCATATCAGATCCTGAGCTGAAACAAAAAATTCATCAG
ACATACAGAGTTCAATATATACAGGATATGGTTCTACCTACCCCTTCAGTCTTTGAAGAA
AATATGTTATCAACTCTTCACTCTTTTATCTTTTTCAATAAAGTAGAAATTGTTGGTATG
TTACAGGTAAGTTACCATTCTTTTTTCTCCTACTTAAAAAGATAGCTAGGAGTTCTCCTG
TGGTGCAGCGGTTAAGGATCTGGCATTGTCAATGCAGGGGCTCAGGTTTGATCCCTGGCC
CGAGAACTTCCACATGCTGCAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50738292|ref|XP_419283.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50738292|ref|XP_419283.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               167-792, gnl|bosTau2|chr11 (20630456-20629825)
               

               
               167-792, gnl|Hg17|chr2 (55737828-55737197)
               

               
               167-792, gnl|Mm7|chr11 (29139955-29140586)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-792, gnl|bosTau2|chr11 (20630456-20629825)
               

               
               167-792, gnl|Hg17|chr2 (55737828-55737197)
               

               
               167-792, gnl|Mm7|chr11 (29139955-29140586)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               thg (0.253582)
               

               
               duo (0.172801)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               duo (0.172801)
               

               
               spl (0.143184)

	167-792, gnl\|bosTau2\|chr11 (20630456-20629825)
	167-792, gnl\|Hg17\|chr2 (55737828-55737197)
	167-792, gnl\|Mm7\|chr11 (29139955-29140586)