Non-Coding RNA Search

Ss1.1-rthg11_h18.5

Sequence:


               
               TCTCTTTCTTCTGCCTCAGCTAAGGTTGAGAGCAACTTGGTACAGAGCTCTGAAGCAAGC
GAAGAAAAGAGTAGTAATGTGGCTGCTTCATCAGACAGAGAGGAACGCATCCATCTCTAC
AGAGAAGAACTTCAGAGAGAAAAGCAGCAAACATTGGGGACGAACCTAAATGTGAGTGGT
GCCCTTTACAGAGAAATGACTTTGAAATTAGCTGAGGTTCAGCTGAAATCAGACCTTGCT
GCCCAGAAACTGACTGATTTATAATTACCGGCTCAATTTGGTTATATTTTAGAATAATTT
TTCCCTTCCAGAATGTTTTGGTTCTACTCGTTTTCATTTTCCTTGATAGGCCTGCTCTGC
AAAAATAAAGATTGAGGTTTATTGTAGGATCCTTGGTTTTGAAGATGCACAGAAGAGCTT
GCTTTAGAGCAGCATTTCTCAACTGGGCTCATTTTGCCCCTGGGGTGTTTGACTATGTCT
GGGGATGGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTTTCTTCTGCCTCAGCTAAGGTTGAGAGCAACTTGGTACAGAGCTCTGAAGCAAGC
GAAGAAAAGAGTAGTAATGTGGCTGCTTCATCAGACAGAGAGGAACGCATCCATCTCTAC
AGAGAAGAACTTCAGAGAGAAAAGCAGCAAACATTGGGGACGAACCTAAATGTGAGTGGT
GCCCTTTACAGAGAAATGACTTTGAAATTAGCTGAGGTTCAGCTGAAATCAGACCTTGCT
GCCCAGAAACTGACTGATTTATAATTACCGGCTCAATTTGGTTATATTTTAGAATAATTT
TTCCCTTCCAGAATGTTTTGGTTCTACTCGTTTTCATTTTCCTTGATAGGCCTGCTCTGC
AAAAATAAAGATTGAGGTTTATTGTAGGATCCTTGGTTTTGAAGATGCACAGAAGAGCTT
GCTTTAGAGCAGCATTTCTCAACTGGGCTCATTTTGCCCCTGGGGTGTTTGACTATGTCT
GGGGATGGTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-237, + strand, RNAz p=0.523585

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-237, + strand, RNAz p=0.523585

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152633, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152633, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-458, gnl|bosTau2|chrX (40792364-40791908)
               

               
               1-458, gnl|Hg17|chrX (14621612-14621168)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-458, gnl|bosTau2|chrX (40792364-40791908)
               

               
               1-458, gnl|Hg17|chrX (14621612-14621168)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	1-458, gnl\|bosTau2\|chrX (40792364-40791908)
	1-458, gnl\|Hg17\|chrX (14621612-14621168)