Non-Coding RNA Search

Ss1.1-rthg11_j13.5

Sequence:


               
               GATATATAGAGAATTGATTGACTGCTCATAAGTTTAAATCGGTAAAGTTAGAGACATCTA
TTCCTAAGATCTCATCATTGAAATTTATATGCCACCTTGTCTTTCATAAGAGCTGAAAAC
TGTTGACTAAAATGAAAATCAACTATTCATGTTTTGAAGATAGTTATTAATACTGTTATT
TGTTACAGTTTTGGGCACAGTATATTAAAACATAACTTGTATTGTTCCAATATGTAACGT
GGAGGGCCAGGTCATAAATAATGACATTATAATGGGCTTTTGCACTGTTATTATTTTTCC
TTTGGAATGTGAAGGTCTGAATGAGGGTTTTGATTTTGAATGTTTCAATGTTTTTGAGAA
GCCTTGCTTACATTTTTATGGTGTAGTCATTGGAAATGGAAAAATGGCATTATATATATA
TATATTATATATATATAAATATATATTATACATACTACTCTCCTTTATTTCAGTTACCAT
CCCCATAGAATTTGACAAGAATTGCTATGACTGAAAGGTTTTCGAGTCCTAATTAAAACT
TTATTTATGACAGTATTCATGATTAGCCTGAAATGCATTCTGTAGGTAATCTCTTTGAGT
TTCTGGAATGTTTTCTTAGACTTTTTGGATGTGCAGCCGCTTACACGTCTGAAATTACTT
GAAGGCATCACTTTTAAGAAAGCTTACAATTGGGCCCTGTACCATCCCAAGATCTCTGTA
GCTCCTCTTGGACATTTTTTGCCATACTTATTAAGGGTAGTTGAATAAATAGCATCACCA
TTCTTTGCTGTGGCACAGGTTATAAACTTAAGTGGAGTTTACCGGCAGCATCAAATGTTT
CAGCTTTAAAAAATAAAAGTAGGGTACAAGTTACTGTTTAGTTCTAGAAAATTTGTGCAA
TATGTTCATAACGATGGCTGTGGTTGCCACAAAGTGCCTCGTTTACCTTTAAATACTGTT
AATGTGTCATGCATGCAGATGGAAGGGGTGGAACTGTGCACTAAAGTGGGGGCTTTAACT
GCAGTGTTTGGCAGAGTTGCCTTCTACCCTGCCAGTTCAAAAGTTCAATCTGTTTTCATA
TAAAATATATATGCTAAAAAATTTCAGTCTGTTAAACAGCCTTACTCTCAGCCTCTTCAG
ATACTCTTGTGCTGTGCAGCAGTGGCTCTGTGTGTAAATGCTATGCACTGAGGATACACA
AAATATGATGTGTACAGGATAATGCCTCATACCAATCAGATGTCCATTTGTTATTGTGTT
TGTTAACAACCCTTTATCTCTTAGTGTTATAAACTCCACTTAAAACTGATTAAAGTCTCA
TTCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTTATAATTTAAATTGCTTAGA
TTCATTGACATTTTAAATAATGGGCAGCCAAGTGCGATTAGTAAGTTTTCTGTAAGTTTT
TTTTTTTTTTTTCCTGCTGTCCTTCAAAGACTATAATTATATAAAAATATGAGCCCTTCT
CAGTTTGGGAGTAGAATATCAGTCTACTCATGTTTGAGAGAGGCACTTAACTCTTTTAGG
GCCTTGGTCAACACTAATAAATTGCTTCTAGCACATTAAATACTATGCTAATCCTTAAAA
AGTTCATGATCCTTGAAAAATTGTGCATATATATATATATATATATATATTTTTTTTTTT
TTTTTCTTTTCTAAGTCAGATGTCTGAAGATAATTCCCAAGAATGGATTCGGTATCTCCA
ATTTCAGTTTTGTGGCTTTTCCATTCTATATGATTCTATGGTATCCCATCAACATAAGGA
AAAGTTCATCTCTTCAGTGTGACTTGTGCAGTTTAAAAATTGATATTCCAGGATAGTCTT
ACAGACTTTGTGTACTTGAACTTAAGCTTGTTATTTCTAATATTCTTAAAAGCTTAAAGA
CTAAGGCATATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATATATAGAGAATTGATTGACTGCTCATAAGTTTAAATCGGTAAAGTTAGAGACATCTA
TTCCTAAGATCTCATCATTGAAATTTATATGCCACCTTGTCTTTCATAAGAGCTGAAAAC
TGTTGACTAAAATGAAAATCAACTATTCATGTTTTGAAGATAGTTATTAATACTGTTATT
TGTTACAGTTTTGGGCACAGTATATTAAAACATAACTTGTATTGTTCCAATATGTAACGT
GGAGGGCCAGGTCATAAATAATGACATTATAATGGGCTTTTGCACTGTTATTATTTTTCC
TTTGGAATGTGAAGGTCTGAATGAGGGTTTTGATTTTGAATGTTTCAATGTTTTTGAGAA
GCCTTGCTTACATTTTTATGGTGTAGTCATTGGAAATGGAAAAATGGCATTATATATATA
TATATTATATATATATAAATATATATTATACATACTACTCTCCTTTATTTCAGTTACCAT
CCCCATAGAATTTGACAAGAATTGCTATGACTGAAAGGTTTTCGAGTCCTAATTAAAACT
TTATTTATGACAGTATTCATGATTAGCCTGAAATGCATTCTGTAGGTAATCTCTTTGAGT
TTCTGGAATGTTTTCTTAGACTTTTTGGATGTGCAGCCGCTTACACGTCTGAAATTACTT
GAAGGCATCACTTTTAAGAAAGCTTACAATTGGGCCCTGTACCATCCCAAGATCTCTGTA
GCTCCTCTTGGACATTTTTTGCCATACTTATTAAGGGTAGTTGAATAAATAGCATCACCA
TTCTTTGCTGTGGCACAGGTTATAAACTTAAGTGGAGTTTACCGGCAGCATCAAATGTTT
CAGCTTTAAAAAATAAAAGTAGGGTACAAGTTACTGTTTAGTTCTAGAAAATTTGTGCAA
TATGTTCATAACGATGGCTGTGGTTGCCACAAAGTGCCTCGTTTACCTTTAAATACTGTT
AATGTGTCATGCATGCAGATGGAAGGGGTGGAACTGTGCACTAAAGTGGGGGCTTTAACT
GCAGTGTTTGGCAGAGTTGCCTTCTACCCTGCCAGTTCAAAAGTTCAATCTGTTTTCATA
TAAAATATATATGCTAAAAAATTTCAGTCTGTTAAACAGCCTTACTCTCAGCCTCTTCAG
ATACTCTTGTGCTGTGCAGCAGTGGCTCTGTGTGTAAATGCTATGCACTGAGGATACACA
AAATATGATGTGTACAGGATAATGCCTCATACCAATCAGATGTCCATTTGTTATTGTGTT
TGTTAACAACCCTTTATCTCTTAGTGTTATAAACTCCACTTAAAACTGATTAAAGTCTCA
TTCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATATTTATAATTTAAATTGCTTAGA
TTCATTGACATTTTAAATAATGGGCAGCCAAGTGCGATTAGTAAGTTTTCTGTAAGTTTT
TTTTTTTTTTTTCCTGCTGTCCTTCAAAGACTATAATTATATAAAAATATGAGCCCTTCT
CAGTTTGGGAGTAGAATATCAGTCTACTCATGTTTGAGAGAGGCACTTAACTCTTTTAGG
GCCTTGGTCAACACTAATAAATTGCTTCTAGCACATTAAATACTATGCTAATCCTTAAAA
AGTTCATGATCCTTGAAAAATTGTGCATATATATATATATATATATATATTTTTTTTTTT
TTTTTCTTTTCTAAGTCAGATGTCTGAAGATAATTCCCAAGAATGGATTCGGTATCTCCA
ATTTCAGTTTTGTGGCTTTTCCATTCTATATGATTCTATGGTATCCCATCAACATAAGGA
AAAGTTCATCTCTTCAGTGTGACTTGTGCAGTTTAAAAATTGATATTCCAGGATAGTCTT
ACAGACTTTGTGTACTTGAACTTAAGCTTGTTATTTCTAATATTCTTAAAAGCTTAAAGA
CTAAGGCATATC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               516-689, gnl|bosTau2|chr21 (17251154-17250992)
               

               
               516-689, gnl|Hg17|chr10 (89717684-89717860)
               

               
               516-689, gnl|Mm7|chr9 (66529453-66529630)
               


               
               1221-1339, gnl|bosTau2|chr21 (17251148-17251266)
               

               
               1221-1339, gnl|Hg17|chr5 (177702300-177702402)
               

               
               1221-1339, gnl|Mm7|chr1 (95682572-95682470)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               516-689, gnl|bosTau2|chr21 (17251154-17250992)
               

               
               516-689, gnl|Hg17|chr10 (89717684-89717860)
               

               
               516-689, gnl|Mm7|chr9 (66529453-66529630)
               


               
               1221-1339, gnl|bosTau2|chr21 (17251148-17251266)
               

               
               1221-1339, gnl|Hg17|chr5 (177702300-177702402)
               

               
               1221-1339, gnl|Mm7|chr1 (95682572-95682470)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               cbl (0.918379)
               

               
               thg (0.507164)
               

               
               tra (0.492368)
               

               
               fat (0.442282)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.918379)
               

               
               thg (0.507164)
               

               
               tra (0.492368)
               

               
               fat (0.442282)
               

               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               med (0.232504)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	516-689, gnl\|bosTau2\|chr21 (17251154-17250992)
	516-689, gnl\|Hg17\|chr10 (89717684-89717860)
	516-689, gnl\|Mm7\|chr9 (66529453-66529630)

	1221-1339, gnl\|bosTau2\|chr21 (17251148-17251266)
	1221-1339, gnl\|Hg17\|chr5 (177702300-177702402)
	1221-1339, gnl\|Mm7\|chr1 (95682572-95682470)

	cbl (0.918379)
	thg (0.507164)
	tra (0.492368)
	fat (0.442282)
	cte (0.29274)
	lin (0.291206)
	med (0.232504)
	mgp (0.230681)
	ece (0.229305)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	gul (0.177588)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	hlv (0.139256)
	ste (0.135208)
	kid (0.129735)
	ret (0.128733)
	ebs (0.118301)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)