Ss1.1-rthg11_m24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCTCCCACTGAGGATCATCTTCTGCAAAATACTTTGTGGCCTGAAGTTCAAAAACTAT ATGGACATGGTTATGAAATATTTTGTGTTGCTTGTAACAATTCAAAGACTCTGCTTGCCT CAGCTTGTAAGGCAGCTAAGAAAGAGCATGCTGCTATCATTCTTTGGAACACTACATCTT GGAAACAGGTGCAGAATTTAGTTTTCCACAGTTTGACTGTCACACAGATGGCCTTTTCTC CTGATGACAAGTTCTTACTAGCTGTTTCCAGAGATCGGACCTGGTCACTGTGGAAGAGGC AGGACACAATCCCACCTGAATTAGACCCAGTTTTCAGTCTCTTTGCCTTCACCAACAAAG TCACTGCTGTGCACAGTAGAATTATTTGGTCTTGTGATTGGAGTCCTGATGGCAAGTATT TTTTCACTGGAAGTCGTGACAAAAAGGTGGTTGCCTGGGGTGAATGTGACTCCGGTGATG ACTCCATCGAGCACAGCATAGGTCCCTGCTCCTCCGTTCTGGATGTGGGCGGAGCTGTGA CAGCTGTCAGCGTCTGCCCTGTGCTTAACCTTTCCCAACGATATATTGTTGCAGTAGGAT TAGAGTGTGGAAAGATTTCTTTATACTCCTGGAAAAAGACTAATCAAGTTCCAGAAATAA ATGACTGGATCCACTGTGTAAAAACAAGTCAAAGCCAAAGTCATACACTTGCTATCAAAA AATTATGCTGGAAGAATTGTAATGGAAAAACTGAACAGAATGAAGCAGAAGGCACTGAAT GGTTACACTTTGCAAGCTGTGGCGAAGATCACACTGTGAAGATACACAGAGTCAACAGAT ATGCGCTGTGATGGACTTAGTAACTACAGGCACATTCTCATTGGTGTCTTAAAATCTTTA TCCTGTAAATAGATAACCTTTACCTCATAATTTCATCGTGTTTTGTTTTTAAGTCCTGTT GCAGTTGTCTTTATTTGAGTCATAGACCCTTTGAAATCTAATGAAAGCTACAGACTCTTT TTTCAAAATTTTTGTATGTGCACGCCCTCTCAGAACCTTGCCCATACTTTCAGAGATTCC AACCCACATCCTTGTGTCTCAGATTGAGAGCCTCTGTGTTTATTTTCTTCATGATCAAAT TTGCCTAATTTTGTGTCATTTGGGTCTTTCTCTCTTCATATGCCCCTCTTTGGGACAGCT CAATATTTATTACCCTCCTCCGAGGAAGGACATAAAGAATAAAAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCTCCCACTGAGGATCATCTTCTGCAAAATACTTTGTGGCCTGAAGTTCAAAAACTAT ATGGACATGGTTATGAAATATTTTGTGTTGCTTGTAACAATTCAAAGACTCTGCTTGCCT CAGCTTGTAAGGCAGCTAAGAAAGAGCATGCTGCTATCATTCTTTGGAACACTACATCTT GGAAACAGGTGCAGAATTTAGTTTTCCACAGTTTGACTGTCACACAGATGGCCTTTTCTC CTGATGACAAGTTCTTACTAGCTGTTTCCAGAGATCGGACCTGGTCACTGTGGAAGAGGC AGGACACAATCCCACCTGAATTAGACCCAGTTTTCAGTCTCTTTGCCTTCACCAACAAAG TCACTGCTGTGCACAGTAGAATTATTTGGTCTTGTGATTGGAGTCCTGATGGCAAGTATT TTTTCACTGGAAGTCGTGACAAAAAGGTGGTTGCCTGGGGTGAATGTGACTCCGGTGATG ACTCCATCGAGCACAGCATAGGTCCCTGCTCCTCCGTTCTGGATGTGGGCGGAGCTGTGA CAGCTGTCAGCGTCTGCCCTGTGCTTAACCTTTCCCAACGATATATTGTTGCAGTAGGAT TAGAGTGTGGAAAGATTTCTTTATACTCCTGGAAAAAGACTAATCAAGTTCCAGAAATAA ATGACTGGATCCACTGTGTAAAAACAAGTCAAAGCCAAAGTCATACACTTGCTATCAAAA AATTATGCTGGAAGAATTGTAATGGAAAAACTGAACAGAATGAAGCAGAAGGCACTGAAT GGTTACACTTTGCAAGCTGTGGCGAAGATCACACTGTGAAGATACACAGAGTCAACAGAT ATGCGCTGTGATGGACTTAGTAACTACAGGCACATTCTCATTGGTGTCTTAAAATCTTTA TCCTGTAAATAGATAACCTTTACCTCATAATTTCATCGTGTTTTGTTTTTAAGTCCTGTT GCAGTTGTCTTTATTTGAGTCATAGACCCTTTGAAATCTAATGAAAGCTACAGACTCTTT TTTCAAAATTTTTGTATGTGCACGCCCTCTCAGAACCTTGCCCATACTTTCAGAGATTCC AACCCACATCCTTGTGTCTCAGATTGAGAGCCTCTGTGTTTATTTTCTTCATGATCAAAT TTGCCTAATTTTGTGTCATTTGGGTCTTTCTCTCTTCATATGCCCCTCTTTGGGACAGCT CAATATTTATTACCCTCCTCCGAGGAAGGACATAAAGAATAAAAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 130-324, gnl|bosTau2|chr24 (16231910-16231716) | |
| 130-324, gnl|Hg17|chr18 (31998434-31998628) | |
| 130-324, gnl|Mm7|chr18 (25016014-25016208) | |
| 445-580, gnl|bosTau2|chr24 (16227770-16227635) | |
| 445-580, gnl|canFam2|chr7 (56998650-56998498) | |
| 445-580, gnl|danRer3|chrNA (63134141-63134007) | |
| 445-580, gnl|dasNov1|scaffold_145799 (774-623) | |
| 445-580, gnl|echTel1|scaffold_98579 (3029-2878) | |
| 445-580, gnl|fr1|chrUn (156240083-156239944) | |
| 445-580, gnl|hg17|chr18 (32004010-32004162) | |
| 445-580, gnl|Hg17|chr18 (32004022-32004157) | |
| 445-580, gnl|loxAfr1|scaffold_15924 (28956-28805) | |
| 445-580, gnl|mm7|chr18 (25018984-25019134) | |
| 445-580, gnl|Mm7|chr18 (25018994-25019129) | |
| 445-580, gnl|monDom2|scaffold_4 (11169193-11169035) | |
| 445-580, gnl|panTro1|chr17 (27977567-27977719) | |
| 445-580, gnl|rheMac2|chr18 (29114880-29115044) | |
| 445-580, gnl|rn3|chr18 (16432460-16432610) | |
| 445-580, gnl|tetNig1|chr21 (912621-912742) | |
| 693-1247, gnl|bosTau2|chr24 (16225428-16224870) | |
| 693-1247, gnl|Hg17|chr18 (32008444-32009266) | |
| 693-1247, gnl|Mm7|chr18 (25023049-25023946) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-324, gnl|bosTau2|chr24 (16231910-16231716) | |
| 130-324, gnl|Hg17|chr18 (31998434-31998628) | |
| 130-324, gnl|Mm7|chr18 (25016014-25016208) | |
| 445-580, gnl|bosTau2|chr24 (16227770-16227635) | |
| 445-580, gnl|canFam2|chr7 (56998650-56998498) | |
| 445-580, gnl|danRer3|chrNA (63134141-63134007) | |
| 445-580, gnl|dasNov1|scaffold_145799 (774-623) | |
| 445-580, gnl|echTel1|scaffold_98579 (3029-2878) | |
| 445-580, gnl|fr1|chrUn (156240083-156239944) | |
| 445-580, gnl|hg17|chr18 (32004010-32004162) | |
| 445-580, gnl|Hg17|chr18 (32004022-32004157) | |
| 445-580, gnl|loxAfr1|scaffold_15924 (28956-28805) | |
| 445-580, gnl|mm7|chr18 (25018984-25019134) | |
| 445-580, gnl|Mm7|chr18 (25018994-25019129) | |
| 445-580, gnl|monDom2|scaffold_4 (11169193-11169035) | |
| 445-580, gnl|panTro1|chr17 (27977567-27977719) | |
| 445-580, gnl|rheMac2|chr18 (29114880-29115044) | |
| 445-580, gnl|rn3|chr18 (16432460-16432610) | |
| 445-580, gnl|tetNig1|chr21 (912621-912742) | |
| 693-1247, gnl|bosTau2|chr24 (16225428-16224870) | |
| 693-1247, gnl|Hg17|chr18 (32008444-32009266) | |
| 693-1247, gnl|Mm7|chr18 (25023049-25023946) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| thg (0.380373) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| tra (0.246184) | |
| pan (0.23596) | |
| aor (0.195274) | |
| sto (0.179824) | |
| sin (0.174948) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| sug (0.127291) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.380373) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| tra (0.246184) | |
| pan (0.23596) | |
| aor (0.195274) | |
| sto (0.179824) | |
| sin (0.174948) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| sug (0.127291) |