Non-Coding RNA Search

Ss1.1-rthg11_n10.5

Sequence:


               
               GCTGTGGCCTCAGGCTGACACACAAAGGATAGTGGAGGAATCCTTAAGTCCTCTTTCCCA
CTCTCATGTTTAGGTAAATACTGAAGAATGTTTTTTCTAACATTCTTAGTTCAAGGCCAC
TGAAACAAAATACCATAGACAGGGTGGTTTAAACATCAAACATTTTTTTCTAACAGTTGT
GAAGCTGGGAGGTGTAAGAGCAAAGTACCAGCAAATTCAGTGTCTGGGGAGGGCCTTCTT
CCTGGTTTGCAGATGGCTGTCTTCTTGCTATATCCTCACAGAGCATAGAGAGAGTGAGCT
CTAGTCTCTTCCTCTTTTTATAAGGGCACTAATCCTTCCATGGGGACTCTATCATCTTCC
AAAGGTGCCCATCTCCAGATACCATCACATTGGGGATTAAGGCTTCAGTTATGAATTTTG
GATGGACACATTCAATACATAGAAAATTGCTTCTCCCAATATGTGTAAATCATAAATCTA
CTAATTTCCCCATTTGCACTGAAATAACTTCCTACTGTAATCCCCTATTTTTCTTCAGAT
GTTTTCAGGTTTTTCTCCAAGAATGGGGGTGGGGAACTCTCTAAATAATTGTTACAGAAC
CAGTGGCAATCTTATGAGTACACCTGAATAAATGAGCATAGTGTGGTGATAGAAAAGAGA
TAGTAGAAACAAAAAAAGGATGGTCAACATTTCAAGACCTCTCTTATAGGAAATGGAAAC
ACACAGTAAGTAGCTTTCTGATTGCATGACTTTCTGGTCACATATAAAGAAAATGTACAT
CCTATTCTGAAACTTTTTATCTTTACACTGGCTGCAAGTGTACCCCAGCCTAGGGGATTA
CTTCTGGAGTAGCACAGTTAAAAGCCACCACTCCCTCCTGCACAAATTTATCTGAATGAC
ACTGATGGCTACATTTCTCTGGGTTTAAGTTGTCCATCACTATGCTTCCCATATAGTGCT
ACTTCACTTTTAAAGCAACTTTTAAGAAAACTCAATTTGTATTTTGTTCATTTGAAGTAT
GTGATACTAAAAAACACATTGGACTTTTTTTAAGCACTCATGTTTTGAAAATAGAATAAA
AACTTAGAATTTCCAATTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTGGCCTCAGGCTGACACACAAAGGATAGTGGAGGAATCCTTAAGTCCTCTTTCCCA
CTCTCATGTTTAGGTAAATACTGAAGAATGTTTTTTCTAACATTCTTAGTTCAAGGCCAC
TGAAACAAAATACCATAGACAGGGTGGTTTAAACATCAAACATTTTTTTCTAACAGTTGT
GAAGCTGGGAGGTGTAAGAGCAAAGTACCAGCAAATTCAGTGTCTGGGGAGGGCCTTCTT
CCTGGTTTGCAGATGGCTGTCTTCTTGCTATATCCTCACAGAGCATAGAGAGAGTGAGCT
CTAGTCTCTTCCTCTTTTTATAAGGGCACTAATCCTTCCATGGGGACTCTATCATCTTCC
AAAGGTGCCCATCTCCAGATACCATCACATTGGGGATTAAGGCTTCAGTTATGAATTTTG
GATGGACACATTCAATACATAGAAAATTGCTTCTCCCAATATGTGTAAATCATAAATCTA
CTAATTTCCCCATTTGCACTGAAATAACTTCCTACTGTAATCCCCTATTTTTCTTCAGAT
GTTTTCAGGTTTTTCTCCAAGAATGGGGGTGGGGAACTCTCTAAATAATTGTTACAGAAC
CAGTGGCAATCTTATGAGTACACCTGAATAAATGAGCATAGTGTGGTGATAGAAAAGAGA
TAGTAGAAACAAAAAAAGGATGGTCAACATTTCAAGACCTCTCTTATAGGAAATGGAAAC
ACACAGTAAGTAGCTTTCTGATTGCATGACTTTCTGGTCACATATAAAGAAAATGTACAT
CCTATTCTGAAACTTTTTATCTTTACACTGGCTGCAAGTGTACCCCAGCCTAGGGGATTA
CTTCTGGAGTAGCACAGTTAAAAGCCACCACTCCCTCCTGCACAAATTTATCTGAATGAC
ACTGATGGCTACATTTCTCTGGGTTTAAGTTGTCCATCACTATGCTTCCCATATAGTGCT
ACTTCACTTTTAAAGCAACTTTTAAGAAAACTCAATTTGTATTTTGTTCATTTGAAGTAT
GTGATACTAAAAAACACATTGGACTTTTTTTAAGCACTCATGTTTTGAAAATAGAATAAA
AACTTAGAATTTCCAATTAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               2-794, gnl|bosTau2|chrX (24073223-24072437)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-794, gnl|bosTau2|chrX (24073223-24072437)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               tbr (1.69596)
               

               
               ste (0.946458)
               

               
               sme (0.91631)
               

               
               isp (0.601504)
               

               
               bfe (0.599431)
               

               
               pro (0.512033)
               

               
               ldo (0.38801)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               clu (0.119646)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (1.69596)
               

               
               ste (0.946458)
               

               
               sme (0.91631)
               

               
               isp (0.601504)
               

               
               bfe (0.599431)
               

               
               pro (0.512033)
               

               
               ldo (0.38801)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               clu (0.119646)

	tbr (1.69596)
	ste (0.946458)
	sme (0.91631)
	isp (0.601504)
	bfe (0.599431)
	pro (0.512033)
	ldo (0.38801)
	fce (0.271592)
	ssp (0.271039)
	thg (0.253582)
	fbs (0.175346)
	spl (0.143184)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	clu (0.119646)