Non-Coding RNA Search

Ss1.1-rthg11_p4.5

Sequence:


               
               TTAGCCAACGATAACGGCGACGGCGAAACCTCGGAGCTCGCAGGGCGGGGGGAAGGCCCG
GGCCGTGGAGATGGAGAATTCCCAGTTGTGTAAGCTGTTCATAGGCGGCCTCAACGTGCA
GACGAGTGAGTCGGGCCTGCGCGGCCACTTTGAGGCCTTTGGGACCCTGACAGACTGCGT
GGTGGTGGTGAACCCCCAGACCAAGCGCTCCCGTTGCTTCGGCTTCGTGACCTACTCCAA
TGTGGAGGAGGCCGATGCCGCCATGGCTGCCTCGCCCCATGCCGTGGACGGCAACACGGT
GGAGCTGAAGCGGGCGGTGTCCCGGGAGGATTCGGCGCGGCCCGGTGCTCACGCCAAGGT
GAAGAAGCTCTTTGTCGGGGGCCTTAAGGGAGACGTGGCCGAGGGCGACCTGATCGAGCA
CTTCTCGCAGTTTGGCACCGTGGAAAAGGCCGAGATTATTGCCGACAAGCAGTCGGGCAA
GAAGCGGGGCTTCGGCTTCGTGTATTTTCAGAATCACGACGCGGCAGATAAGGCCGCGGT
GGTGAAGTTCCATCCGATCCAGGGCCATCGCGTGGAGGTGAAAAAGGCTGTCCCCAAGGA
GGATATCCACTCCGGTGGGGGCGGAGGCGGCTCGCGGTCCTCGCGGGGCGGCCGTGGCGG
CCGGGGTCGCGGCGGCGGTCGTGACCAGAACGGCCTGTCTAAGGGCGGCGGCGGCGGTTA
CAACAGCTACGGGGGTTACGGCGGCGGCGGCGGCTACAACGCCTACGGAGGCGGCGGCGG
CGGCTCGTCCTACGGTGGAAGCGACTACGGTAACGGCTTCGGCGGCTTCGGCAGCTACAG
CCAGCACCAGTCCTCCTATGGGCCCATGAAGAGCGGCGGCGGCGGCGGCGGAGGCAGCAG
CTGGGGCGGTCGCAGTAACAGTGGACCTTACAGAGGCGGCTATGGCGGTGGGGGTGGCTA
TGGAGGCAGCTCCTTCTAAAAAATTTTAAACGTGTGGGAGTGGATATGGGGGTAGCTCTT
TCAACCACCCAAGTAGGGTCAACTCCTAAGTTCCTTCCCCTCCCAGCACCTTCCTTATTT
TGCCCTTGGTGGGGAGCCACTCGTATGGCTGCTTACCCGTGGGGGTGTTGCCCTATTTGC
CTGCCACCTCTCGTCTCTCCCTTTGAAGATGGACTTGGCCCCACATACACATTTTTGTGT
TACAGTCATTGATGGACTCTATTTTTTTATTATTACTTGGACCTTGGTCGTTTTTATACT
AGCAAAATGTCTTGTTTTAATTTGTGTTTTTTTGGGGGGGAGGGAGTGAACTTGCTGATT
CTGTAGCAAAACCTGGGCGGGGGTTGGGGGGGTAGTTTACTTTGTTGTAAGGACTTGATA
CCTGGCTACAGCGTTTTCTATGAAATCTACTTGGATCCCATGCCCGAAATTTGGAAGCAT
ATGTACAAAAATCATTTTTACGTTTTATTTTTAATAAATCATTGTGTTTGACCGTACATG
TCTAACATTTTTTTCCTAGGATCCATTCCGTACCGTTTTAAGGGATGTTGAAAATTTTTC
GTGTTAATTCTTAATTCTTGATGTGTACTTAGAGAAACTTTTAAAAGGTCCTGTGGGTTT
TTTTTCCTTCCTGTTACACTGCTAGTGACGTGTTGAATTTTATCCCTTACAGGCAAAACT
TTTGAAGTGGTGGATGTGGCTTTTTAAAATCTTTAAAGTTTCTCTGCATCCATCTCTTGT
ACTAAGCGATTTGCTTATCATCTTGACATGGTTGGTTACTTCTTTCTATGAGAATTTACT
TCAAAGTATGTACTGTGTAGTTCTAAATAGTTTGTGTTAAGCATGTGTTTTCATTCATAT
AAACTGTTGAGAATTTTCAGATGGCCTAGATTCATCCCTTTTACTGGTTTGTCTGTAATG
AATGGTTACAAATAAGGGTTCTATTTTACCCTCAAACTAAATGCATTTTTGTATTTTCAG
AGCAGGTTTAAATGTTTTTTTTTTTCCTATAGCTGAAATGTTGTCCTCATGGAAATCCTT
CCCCCAACCTTTGTAGCACCATCTACTGGCAGAATGGCAGTATATCTGCAAAACAATTTG
TTTAAAAACTTGTTTAACAAGGACAGTTGCATCAGATTTAGAAGTTTTGCCATCGAAGAT
CTGTGCAGACTTTGGTTATGTATTTACTTGTAACTAAGATGGGCTTTCCAGGAATGTAGT
TATCAGTCCATATCACAATTGCCCTTTCTACATGAGATTTGAAAATGTAAACTGCTATGC
ATAGCTTGGGCAGTGGCCCCAAATTGCTATGACAACTAATGAACCAGCTATGTGTACTGG
TATCTTACTTAGGTGCAAGTTGTAAAGCAAAACATCTGTGTATTCTGCTTGGTTAACAAA
TGTATATTTGTAGCCCTTTCATGCAATAGAATTCAAGTTGTTGTTTATAAAAAGCAAAAC
AAAACAATGATATAGGAGAAAATTGCCTTCCTGGATAGAAATATAGAATAGCAACGTTTA
TGGATATCGCAAATAAAGAATTCATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGCCAACGATAACGGCGACGGCGAAACCTCGGAGCTCGCAGGGCGGGGGGAAGGCCCG
GGCCGTGGAGATGGAGAATTCCCAGTTGTGTAAGCTGTTCATAGGCGGCCTCAACGTGCA
GACGAGTGAGTCGGGCCTGCGCGGCCACTTTGAGGCCTTTGGGACCCTGACAGACTGCGT
GGTGGTGGTGAACCCCCAGACCAAGCGCTCCCGTTGCTTCGGCTTCGTGACCTACTCCAA
TGTGGAGGAGGCCGATGCCGCCATGGCTGCCTCGCCCCATGCCGTGGACGGCAACACGGT
GGAGCTGAAGCGGGCGGTGTCCCGGGAGGATTCGGCGCGGCCCGGTGCTCACGCCAAGGT
GAAGAAGCTCTTTGTCGGGGGCCTTAAGGGAGACGTGGCCGAGGGCGACCTGATCGAGCA
CTTCTCGCAGTTTGGCACCGTGGAAAAGGCCGAGATTATTGCCGACAAGCAGTCGGGCAA
GAAGCGGGGCTTCGGCTTCGTGTATTTTCAGAATCACGACGCGGCAGATAAGGCCGCGGT
GGTGAAGTTCCATCCGATCCAGGGCCATCGCGTGGAGGTGAAAAAGGCTGTCCCCAAGGA
GGATATCCACTCCGGTGGGGGCGGAGGCGGCTCGCGGTCCTCGCGGGGCGGCCGTGGCGG
CCGGGGTCGCGGCGGCGGTCGTGACCAGAACGGCCTGTCTAAGGGCGGCGGCGGCGGTTA
CAACAGCTACGGGGGTTACGGCGGCGGCGGCGGCTACAACGCCTACGGAGGCGGCGGCGG
CGGCTCGTCCTACGGTGGAAGCGACTACGGTAACGGCTTCGGCGGCTTCGGCAGCTACAG
CCAGCACCAGTCCTCCTATGGGCCCATGAAGAGCGGCGGCGGCGGCGGCGGAGGCAGCAG
CTGGGGCGGTCGCAGTAACAGTGGACCTTACAGAGGCGGCTATGGCGGTGGGGGTGGCTA
TGGAGGCAGCTCCTTCTAAAAAATTTTAAACGTGTGGGAGTGGATATGGGGGTAGCTCTT
TCAACCACCCAAGTAGGGTCAACTCCTAAGTTCCTTCCCCTCCCAGCACCTTCCTTATTT
TGCCCTTGGTGGGGAGCCACTCGTATGGCTGCTTACCCGTGGGGGTGTTGCCCTATTTGC
CTGCCACCTCTCGTCTCTCCCTTTGAAGATGGACTTGGCCCCACATACACATTTTTGTGT
TACAGTCATTGATGGACTCTATTTTTTTATTATTACTTGGACCTTGGTCGTTTTTATACT
AGCAAAATGTCTTGTTTTAATTTGTGTTTTTTTGGGGGGGAGGGAGTGAACTTGCTGATT
CTGTAGCAAAACCTGGGCGGGGGTTGGGGGGGTAGTTTACTTTGTTGTAAGGACTTGATA
CCTGGCTACAGCGTTTTCTATGAAATCTACTTGGATCCCATGCCCGAAATTTGGAAGCAT
ATGTACAAAAATCATTTTTACGTTTTATTTTTAATAAATCATTGTGTTTGACCGTACATG
TCTAACATTTTTTTCCTAGGATCCATTCCGTACCGTTTTAAGGGATGTTGAAAATTTTTC
GTGTTAATTCTTAATTCTTGATGTGTACTTAGAGAAACTTTTAAAAGGTCCTGTGGGTTT
TTTTTCCTTCCTGTTACACTGCTAGTGACGTGTTGAATTTTATCCCTTACAGGCAAAACT
TTTGAAGTGGTGGATGTGGCTTTTTAAAATCTTTAAAGTTTCTCTGCATCCATCTCTTGT
ACTAAGCGATTTGCTTATCATCTTGACATGGTTGGTTACTTCTTTCTATGAGAATTTACT
TCAAAGTATGTACTGTGTAGTTCTAAATAGTTTGTGTTAAGCATGTGTTTTCATTCATAT
AAACTGTTGAGAATTTTCAGATGGCCTAGATTCATCCCTTTTACTGGTTTGTCTGTAATG
AATGGTTACAAATAAGGGTTCTATTTTACCCTCAAACTAAATGCATTTTTGTATTTTCAG
AGCAGGTTTAAATGTTTTTTTTTTTCCTATAGCTGAAATGTTGTCCTCATGGAAATCCTT
CCCCCAACCTTTGTAGCACCATCTACTGGCAGAATGGCAGTATATCTGCAAAACAATTTG
TTTAAAAACTTGTTTAACAAGGACAGTTGCATCAGATTTAGAAGTTTTGCCATCGAAGAT
CTGTGCAGACTTTGGTTATGTATTTACTTGTAACTAAGATGGGCTTTCCAGGAATGTAGT
TATCAGTCCATATCACAATTGCCCTTTCTACATGAGATTTGAAAATGTAAACTGCTATGC
ATAGCTTGGGCAGTGGCCCCAAATTGCTATGACAACTAATGAACCAGCTATGTGTACTGG
TATCTTACTTAGGTGCAAGTTGTAAAGCAAAACATCTGTGTATTCTGCTTGGTTAACAAA
TGTATATTTGTAGCCCTTTCATGCAATAGAATTCAAGTTGTTGTTTATAAAAAGCAAAAC
AAAACAATGATATAGGAGAAAATTGCCTTCCTGGATAGAAATATAGAATAGCAACGTTTA
TGGATATCGCAAATAAAGAATTCATTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6IB18_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IB18_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               438-557, + strand, RNAz p=0.847218
               

               
               974-1201, - strand, RNAz p=0.981329
               

               
               1681-1796, - strand, RNAz p=0.830399
               

               
               2246-2404, - strand, RNAz p=0.985004

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-557, + strand, RNAz p=0.847218
               

               
               974-1201, - strand, RNAz p=0.981329
               

               
               1681-1796, - strand, RNAz p=0.830399
               

               
               2246-2404, - strand, RNAz p=0.985004

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006805, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006805, +

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-2552, gnl|bosTau2|chr7 (37344274-37341715)
               

               
               1-2552, gnl|Hg17|chr5 (137117727-137115161)
               

               
               1-2552, gnl|Mm7|chr13 (57220726-57218221)
               


               
               83-606, gnl|bosTau2|chr21 (39567424-39566902)
               

               
               83-606, gnl|Hg17|chr16 (50237263-50237786)
               

               
               83-606, gnl|Mm7|chr9 (123406404-123405880)
               


               
               2224-2410, gnl|bosTau2|chr16 (11432281-11432460)
               

               
               2224-2410, gnl|Hg17|chr1 (216673581-216673403)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2552, gnl|bosTau2|chr7 (37344274-37341715)
               

               
               1-2552, gnl|Hg17|chr5 (137117727-137115161)
               

               
               1-2552, gnl|Mm7|chr13 (57220726-57218221)
               


               
               83-606, gnl|bosTau2|chr21 (39567424-39566902)
               

               
               83-606, gnl|Hg17|chr16 (50237263-50237786)
               

               
               83-606, gnl|Mm7|chr9 (123406404-123405880)
               


               
               2224-2410, gnl|bosTau2|chr16 (11432281-11432460)
               

               
               2224-2410, gnl|Hg17|chr1 (216673581-216673403)

Expressed library(ies): 52 entry(ies)

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Expressed library(ies): 52 entry(ies)

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               fli (0.608643)
               

               
               ebs (0.591506)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               fat (0.442282)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.608643)
               

               
               ebs (0.591506)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               ecc (0.46014)
               

               
               ece (0.45861)
               

               
               fat (0.442282)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               eye (0.341006)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	438-557, + strand, RNAz p=0.847218
	974-1201, - strand, RNAz p=0.981329
	1681-1796, - strand, RNAz p=0.830399
	2246-2404, - strand, RNAz p=0.985004

	1-2552, gnl\|bosTau2\|chr7 (37344274-37341715)
	1-2552, gnl\|Hg17\|chr5 (137117727-137115161)
	1-2552, gnl\|Mm7\|chr13 (57220726-57218221)

	83-606, gnl\|bosTau2\|chr21 (39567424-39566902)
	83-606, gnl\|Hg17\|chr16 (50237263-50237786)
	83-606, gnl\|Mm7\|chr9 (123406404-123405880)

	2224-2410, gnl\|bosTau2\|chr16 (11432281-11432460)
	2224-2410, gnl\|Hg17\|chr1 (216673581-216673403)

	fli (0.608643)
	ebs (0.591506)
	thg (0.507164)
	mgp (0.461361)
	ecc (0.46014)
	ece (0.45861)
	fat (0.442282)
	cmu (0.372787)
	fty (0.351679)
	eye (0.341006)
	fhi (0.339155)
	cki (0.330469)
	sme (0.305437)
	cag (0.302389)
	bfe (0.299715)
	cte (0.29274)
	pla (0.267344)
	nmm (0.265604)
	sug (0.254582)
	ese (0.253004)
	eru (0.240096)
	pgl (0.236967)
	nms (0.213858)
	mas (0.210305)
	cty (0.20816)
	jej (0.197844)
	aor (0.195274)
	ldo (0.194005)
	nlu (0.191681)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	fbs (0.175346)
	cje (0.165235)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)
	ute (0.132784)
	kid (0.129735)
	bla (0.124347)
	eep (0.122564)
	jca (0.11396)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)